Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0595 ATGACAAGGGACGGCATCATGAGCATTGATGGTGATGATAAAGAATTTCAAGAATTGGCTCAGCGACTACGAGATTGTAAAAAAACCACGAAAGAGGGAGTTGCCCGTGACGAACATAGTTTCTGTGAGGATGATGAGTTAAAAAGTAATGGAACAGCTGAAGAAGTTAAAGTGGGACAATATGGGATTGTGGAAGCCCCAGCCGTTCAGCATATGCCACAACAACAGCCTCAAGGTGCAATTTGGGAGAGATTCCTACATCTCAGATCCCTCAAGGTCTTGCTTGTGGAGATAGATGACTCTACTCGTCATGTTGTCGCAGCACTGCTTCGCAACTGTAGTTATGAAGTTATTGAAGCAGCAAACGGATTGCAAGCATGGAAGATCTTGGAAGATCTAACCAATCAAATAGATCTTGTTTTGACTGAGTTAGCGATGCCTTGCTTATCAGGCATTGGCCTTTTGTCCAAAATTATGGCCCACAAAACGCGGAAAAACATTCCAGTAATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTTGTGAAACCTATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTGTGGAGAAGATGTCATAGTTCAAGTGGTAGTGATAGTGGAAGTGGAAGTGAAAGTGGCACGCAAACTCAGAAATCCATTAAATCAAAGAGTCTTGAGAAGTCTGATAACAACAGTGGCAGCAATGATGAAGAAGACGATGGTAGTGTAGGTCTAAATAACGGGGATGGAAGTGACAATGGTAGTGGTACTCAGGGCTCATGGACTAAACAAGCTGTAGAAGTCGACAGTCCCAAACCATCCCATGGGGATCATATAGCTGAGTGCCCTGATAGCACCTGTGCTCAAGTTGTTCTCTCAAATGCCGAAATTAGTGGAAACAAGGTGTTTTCTGTGGCCATAAAGGAGTGTCCAGATCAGAAGGATCAGCTTGAGCTGAAAGTGGACTCGAGTAGGGATCTTGGCTTGATTCTCGACTATAGAAATGAGGATTTAGCCAATTATTTGGGAGAAAAGCATAGTAACCCACTTGATATAGGCTCCTCTAAATTCAATGAGCAACTTAATAGAGGACAGCTGGAACATCACTGTGAAGATCCTTCTAGCAAATTGAGATGCAAAGGTCCATTTCAGTCTGATGCTGCTGCTATTACATATGATTTGCGGATTCATGGTGGAGAATTTGAAGCCTCAAAAAGAAGAGTCAAGCCTTCAGATACTGGAAGCAAAGCTATTAATGATAATGAAGACTTGCCATCTCTTGAGCTCAGTTTAAAGAGACTTAGGGGAGATAAAGATTCTGGGATTACAATTCAGGATGAACGTAATGTTTTAAGACGATCAGACCTTTCAGCCTTTTCAAGGTACAATGCTGCTTCTAATGCTAAGAAATCTCCTGGTGGTTGTGCTGGAAGCAATTCTCCCCATAATAATAGCTTAGAAGTTACAAAGAAAGATTTGTCACGTGACATCCAATCCCATTCTAGCGGAAATCCCCCTAACCAGAACTCGAATGGTGCCAGCAATAACATTGACATGGGCTCCACGACTGATAACGCTTTCACTAAATCTGCTATTATGAGCAAGACAACTGTGGTGTCACCGAGTAAGTGTTTGTATCAATCTTCTGCCTTCCAGCCTATAAAAAACAACTTCATGTGTACCTCTCAACAAGTTGCAGTACATAGTACTGAAGATGTGACAGCCTCAACTATGCTAGAACCACCTAGAGGTATGCACAAGGACTCTCCAACACAGGACTTCCATGGCATGTACAACAACCATAGCTGCATCGTTAACAACATGCAGCATCAGCTACCCCTAGACCATGATGATGCATCATCAAAGAAAATTGCTGCCACAGCTCCACACTGTGGGTCATCAAATCTAGTTGAAATGGTTGAAGGTAATGTTGGAAATTATAGTATCAATAGAAGTGTATCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGTACTGCAGTCAATGCTGGAGGGATAAACATAGAAAATAACAAAGGAATTGCTGGGAATAATCGAGGTGGTGATGCTAGTGGGAGTGGAAGTGGAAGTGCTAACAGAATAGATCAGAAGAAGACTTCTCAAAGAGAAGCAGCCTTAACTAAATTTCGCCAGAAGAGAAAAGAAAGGTGCTTTCGGAAAAAGGTTCGATATCAAAGCAGAAAGAAATTAGCTGAACAACGACCTCGCTTTCGTGGACAATTTGTTCGACAGGCCTCCAACAAGAGTACAAGTGAGGAAGAAGAGGCAACCGACAGCTGA 2352 0.4243 MTRDGIMSIDGDDKEFQELAQRLRDCKKTTKEGVARDEHSFCEDDELKSNGTAEEVKVGQYGIVEAPAVQHMPQQQPQGAIWERFLHLRSLKVLLVEIDDSTRHVVAALLRNCSYEVIEAANGLQAWKILEDLTNQIDLVLTELAMPCLSGIGLLSKIMAHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSDSGSGSESGTQTQKSIKSKSLEKSDNNSGSNDEEDDGSVGLNNGDGSDNGSGTQGSWTKQAVEVDSPKPSHGDHIAECPDSTCAQVVLSNAEISGNKVFSVAIKECPDQKDQLELKVDSSRDLGLILDYRNEDLANYLGEKHSNPLDIGSSKFNEQLNRGQLEHHCEDPSSKLRCKGPFQSDAAAITYDLRIHGGEFEASKRRVKPSDTGSKAINDNEDLPSLELSLKRLRGDKDSGITIQDERNVLRRSDLSAFSRYNAASNAKKSPGGCAGSNSPHNNSLEVTKKDLSRDIQSHSSGNPPNQNSNGASNNIDMGSTTDNAFTKSAIMSKTTVVSPSKCLYQSSAFQPIKNNFMCTSQQVAVHSTEDVTASTMLEPPRGMHKDSPTQDFHGMYNNHSCIVNNMQHQLPLDHDDASSKKIAATAPHCGSSNLVEMVEGNVGNYSINRSVSGSNNGSNGQNGSSTAVNAGGINIENNKGIAGNNRGGDASGSGSGSANRIDQKKTSQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRFRGQFVRQASNKSTSEEEEATDS 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0595 783 PANTHER TWO-COMPONENT RESPONSE REGULATOR 91 286 IPR045279 GO:0009736
Lele15g0595 783 MobiDBLite consensus disorder prediction 252 275 - -
Lele15g0595 783 SUPERFAMILY CheY-like 89 214 IPR011006 -
Lele15g0595 783 ProSiteProfiles Response regulatory domain profile. 92 210 IPR001789 GO:0000160
Lele15g0595 783 MobiDBLite consensus disorder prediction 669 688 - -
Lele15g0595 783 MobiDBLite consensus disorder prediction 482 501 - -
Lele15g0595 783 MobiDBLite consensus disorder prediction 705 719 - -
Lele15g0595 783 CDD psREC_PRR 93 196 - -
Lele15g0595 783 SMART REC_2 91 206 IPR001789 GO:0000160
Lele15g0595 783 MobiDBLite consensus disorder prediction 696 783 - -
Lele15g0595 783 Gene3D - 90 245 - -
Lele15g0595 783 MobiDBLite consensus disorder prediction 507 537 - -
Lele15g0595 783 MobiDBLite consensus disorder prediction 736 751 - -
Lele15g0595 783 MobiDBLite consensus disorder prediction 513 537 - -
Lele15g0595 783 ProSiteProfiles CCT domain profile. 726 768 IPR010402 GO:0005515
Lele15g0595 783 MobiDBLite consensus disorder prediction 216 275 - -
Lele15g0595 783 MobiDBLite consensus disorder prediction 720 735 - -
Lele15g0595 783 Pfam Response regulator receiver domain 93 204 IPR001789 GO:0000160
Lele15g0595 783 MobiDBLite consensus disorder prediction 216 236 - -
Lele15g0595 783 FunFam Two-component response regulator-like PRR37 91 253 - -
Lele15g0595 783 Pfam CCT motif 726 768 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0595 Lele-ChrLele15 3500210 3508385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0595 167 770 Response Regulator Gene Family AT5G02810 46.006 2.77e-115 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele15g0595 Response_reg 3e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1812 13 26223581 26231582 Lele15g0595 15 3500210 3508385 hybridization
Lele14g1755 14 24612650 24619944 Lele15g0595 15 3500210 3508385 hybridization