Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0592 ATGGGTTGGATTCCATGTTCTGGAAATCCAAACGGCAAGAAAAAGGGAAAGAATAAGATAAAGAAGACGGGAGTGCGGGAGAATACGGTAGATCAAACCAAAACAACTCCAGGGAAGTTGAAGAGGAATTCATCCACCAGTTCCAAAGATCCCTCTAAAAATGGGAATTCTGATCACATTGCGGCTCAGACTTTCACATTCCGTGAGTTGGCGACTGCAACTAGAAACTTTAGGAGAGAAAGTCTTGTAGGAGAGGGAGGATTTGGTAGGGTATACAAAGGGCGTTTGGAAAGTTCTAATCAGGTTGTCGCAATAAAGCAACTTGACCGAGATGGGCTGCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCACCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATACATGCCATTGGGGTCCTTGGAAGATCACTTATATGATATTTCTCCTGCCAAAAAACAGCTCGATTGGAACACGCGAATGAAAATTGCTGCTGGGGCAGCAAAGGGATTGGAATATCTGCATGACAAAGCGAACCCTCCCGTCATATACCGAGATTTAAAGTGTTCGAACATTTTGCTTGGGGAAGGGTATCATCCAAAGTTATCTGATTTCGGTTTGGCTAAACTTGGACCTGTTGGGGAAAACACCCATGTATCCACGAGGGTTATGGGTACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTAACACTGAAATCAGATGTTTATAGCTTTGGCATAGTTCTTCTGGAAATAATCACAGGAAGGAAAGCCATTGACAGCTCAAAAGCTGCGGGAGAGCAGAATCTCGTTGCATGGGCAAGACCCTTGTTTAAAGATCGAAGAAAATTTTCACAAATGGCTGATCCAATGCTTCAAGGTCAGTATCCTCCCAGAGGCTTATATCAAGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAAGCAAATATGCGGCCAGTTATAGCTGATGTCGTCACTGCCTTGTCTTACCTTGCTTCCCAAAGGTAG 1077 0.4373 MGWIPCSGNPNGKKKGKNKIKKTGVRENTVDQTKTTPGKLKRNSSTSSKDPSKNGNSDHIAAQTFTFRELATATRNFRRESLVGEGGFGRVYKGRLESSNQVVAIKQLDRDGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLYDISPAKKQLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGIVLLEIITGRKAIDSSKAAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0592 358 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Lele15g0592 358 FunFam Serine/threonine-protein kinase PBS1 49 153 - -
Lele15g0592 358 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g0592 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Lele15g0592 358 MobiDBLite consensus disorder prediction 29 59 - -
Lele15g0592 358 Gene3D Transferase(Phosphotransferase) domain 1 154 358 - -
Lele15g0592 358 Pfam Protein tyrosine and serine/threonine kinase 81 350 IPR001245 GO:0004672|GO:0006468
Lele15g0592 358 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g0592 358 FunFam Serine/threonine-protein kinase PBS1 154 358 - -
Lele15g0592 358 PANTHER OS07G0668900 PROTEIN 24 357 - -
Lele15g0592 358 MobiDBLite consensus disorder prediction 1 59 - -
Lele15g0592 358 SUPERFAMILY Protein kinase-like (PK-like) 58 351 IPR011009 -
Lele15g0592 358 Gene3D Phosphorylase Kinase; domain 1 47 153 - -
Lele15g0592 358 CDD STKc_IRAK 83 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0592 Lele-ChrLele15 3492210 3494639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0592 31 356 Glycoside Hydrolase AT3G07070 66.258 7.08e-165 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lele15g0592 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1122 06 6989084 6993711 Lele15g0592 15 3492210 3494639 CCT
Lele07g1304 07 7909996 7911856 Lele15g0592 15 3492210 3494639 CCT
Lele08g1109 08 6981271 6989146 Lele15g0592 15 3492210 3494639 CCT
Lele13g1814 13 26236224 26238679 Lele15g0592 15 3492210 3494639 hybridization
Lele14g1757 14 24626143 24628679 Lele15g0592 15 3492210 3494639 hybridization