Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0570 ATGGCTTTGACGCTAAACTACCGTTTAAAAGAAAGGTGGATACCTCCACAGTCCGGCGCACAAAAAGAGGAATCACATGAAATGGCCAGAAAACAAGCTGCGTTTTTTCATGTGGATGAAGACTACATCGATATGGAGATAAGTTCTTCCTCCTCCTCAGACTTCTTCTCTTACTCCATTAGCTCTCCAGCAAAAAGCAGAGAGTTTGAGTTCCAGATGACATCATCAATTTCCAACCAGAAAGAGTCCACTACTTCCTCAGCTGATGAACTATTCTACAAAGGGAAACTCCTCCCTCTTCATTTTCCACCTCGCCTGCAAATGGTTCAGAAGCTTCTCGAGAATTCCAATGAGTCAGCATTGAAAGATACAAGATTTCCCTTCTCCACTGAATCTGATCTCAGATTACCTTCTACAAATGCCAGCACTCCCTTGGAATCCTGCAATATTTCCCCTTCAGAATCATGCAGGGCTAGTAGTGAAGTAAATCCAGATGAATACCTGTACAACTGGTCCACTGAAATACATGGGTTTTTAGGTGCCGATATCCCAAAGAAATCTTGGTCTAAGAAGCTGAAACAGATCAAGCAGTTCTGGTTGGGTCAAAGGCTCAAGGCTTCACGAGCATATCTGAAGTCCTTGTTCAACAAATCTGCTTGTTCAGGCAAGTCATGTGCTAATGCAGCAAATAATACGGGACGAGTAGGAAGGAAATCAGAATGCCAAGACTGTCAGAATAAGTACACCAAAGTCACTGCTAGGAAAAATTCATTCGAAATTATTGATGAGAGCAGGCACCAGATTTCATGTGCAGTCATGAAGACCATAAACAGAGAGGTGCTTGAAGATCGTCTCATGAATAACCATAGGAGGTCCTTCTCAGGGGCGATTCAACGGCATTCTGCAGCCAAGGCTTCTTCTTTGTCCACATCTTCGTCTGGGTCATCTTCTAAATCTTCGTCGTTTTCATTCAGCTCAAGTGGGTTCTATGATTTACAGTTGGTCAGGAGGAGCAGCAGTGCAAATTCAGAGCTTGAAGGCTCAATTGAGGGAGCCATAGCCCATTGTAAACAGTCTCAACAGCAATGCAGTTCAAGGAAGAGTTTGGATCATAATGCGGGGAAAATCGCAGTTTGTGAAACGAAAGCACGTGACAGCGCTAGAGAGAAACAGACAGATAGTAGTGGAAGAGAGGAGAGAACTCTGTTAGAAATAATAGGACTGTCTAATGTTCCCTGCACAGCTTATCGGGCTTTGGTTGGAAATCATGCGGGCTTTAAGCCTCACATTGGAAAGGAAATCAGCAACCATATCAAAGTTATGTTAATGGATCAACCTATAGAAAAACTGGATAAAGATTGTTTCAGACTATGGAGCTCAAAGAATAGCCTTAGAGCCAAACATGAGAAGCGATTAGATGAATCTGTCCTTCACGAGTTTTGGCAAATAACTCCTCCCTCTCACGGCCACTTCGCCGCTGGAATGCTCCCTTTACCTTATTCCCACGTCGACTCTAGTTTGCGAGCTCTCGCTGCCCAAGCTGAAGGCTTTGGTCGATGTGCGATCGGTGGGCTTCATGGTCCCCTTTATCACGTTACAACCTTAGCAGATGATGGACCAGGATCACTCCGCGATGGTTGTTGCAGAAAAGAACCACTGTGGATTGTGTTTGAGGTTTCTGGAACAATTCATCTTTCATCTTACTTGAGTGTGTCATCTTACAAGACTATTGATGGCCGAGGTCAAAGGATTAAACTCACTGGAAAGGGTTTGCAGCTGAAGGAATGTGAACATGTAATAATTTGCAACTTACAGTTAGAAGGGGGTAGAGGGCCTGATGTGGATGGCATTCAGATCAAGCCAAATTCCAAGCACATATGGATAGACCGTTGCAGCCTCCGTGATTTTGATGATGGACTGATAGATATTACACGAGAAAGCACCGAGATTACTATTTCTAGATGTCATTTTTCTCAGCATGACAAAACGATGCTTATTGGAGCGGATTCCTCACACATTGGTGATAGATGCATGAGGGTGACTATTCACCATTGTTTCTTTGATGGGACACGACAGCGACACCCTCGTGTTAGATTTGCAAAAGTGCATCTGTACAATAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCGAGTGTGGAATCACGGATATACTCACAATGCAACATCTATGAAGCAGGGCAAAAGAAAGTAGCATTTAAGTATCTCTCTGAAAAGGCGGGAGACAAGGAGGCAGAAGCAAGTGGTCACATATGGTCTGAAGGAGACTTGTTCATAAGTGGAACTCAGGCAGGCTTAAAGGTGGAGAGCGTGGGAGCTCCCCCGTTTCATCCGAGTCAACACTATACAACGTGGACGGTGGCACCTCCTACAGGAGAGCTCAAACAGCTTCTTCATCACTGCACCGGATGGCAATGTGTTGCACGCCCACCAGATCAGCCCCTGCCTTCATAG 2478 0.4459 MALTLNYRLKERWIPPQSGAQKEESHEMARKQAAFFHVDEDYIDMEISSSSSSDFFSYSISSPAKSREFEFQMTSSISNQKESTTSSADELFYKGKLLPLHFPPRLQMVQKLLENSNESALKDTRFPFSTESDLRLPSTNASTPLESCNISPSESCRASSEVNPDEYLYNWSTEIHGFLGADIPKKSWSKKLKQIKQFWLGQRLKASRAYLKSLFNKSACSGKSCANAANNTGRVGRKSECQDCQNKYTKVTARKNSFEIIDESRHQISCAVMKTINREVLEDRLMNNHRRSFSGAIQRHSAAKASSLSTSSSGSSSKSSSFSFSSSGFYDLQLVRRSSSANSELEGSIEGAIAHCKQSQQQCSSRKSLDHNAGKIAVCETKARDSAREKQTDSSGREERTLLEIIGLSNVPCTAYRALVGNHAGFKPHIGKEISNHIKVMLMDQPIEKLDKDCFRLWSSKNSLRAKHEKRLDESVLHEFWQITPPSHGHFAAGMLPLPYSHVDSSLRALAAQAEGFGRCAIGGLHGPLYHVTTLADDGPGSLRDGCCRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLQLKECEHVIICNLQLEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTEITISRCHFSQHDKTMLIGADSSHIGDRCMRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESRIYSQCNIYEAGQKKVAFKYLSEKAGDKEAEASGHIWSEGDLFISGTQAGLKVESVGAPPFHPSQHYTTWTVAPPTGELKQLLHHCTGWQCVARPPDQPLPS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0570 825 MobiDBLite consensus disorder prediction 306 325 - -
Lele15g0570 825 PRINTS Pollen allergen Amb family signature 568 584 IPR018082 -
Lele15g0570 825 PRINTS Pollen allergen Amb family signature 513 530 IPR018082 -
Lele15g0570 825 PRINTS Pollen allergen Amb family signature 715 734 IPR018082 -
Lele15g0570 825 SMART amb_all 560 738 IPR002022 -
Lele15g0570 825 Gene3D - 500 800 IPR012334 -
Lele15g0570 825 SUPERFAMILY Pectin lyase-like 513 814 IPR011050 -
Lele15g0570 825 Pfam Pectate lyase 569 730 IPR002022 -
Lele15g0570 825 PANTHER PECTATE LYASE 18-RELATED 502 772 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0570 Lele-ChrLele15 3375531 3385372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0570 495 822 Polysaccharide Lyase AT3G09540 67.073 6.75e-160 468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1135 06 7048135 7050431 Lele15g0570 15 3375531 3385372 CCT
Lele07g1319 07 7961694 7964416 Lele15g0570 15 3375531 3385372 CCT
Lele08g1124 08 7052152 7058064 Lele15g0570 15 3375531 3385372 CCT
Lele13g1834 13 26351165 26355208 Lele15g0570 15 3375531 3385372 hybridization
Lele14g1779 14 24745002 24746664 Lele15g0570 15 3375531 3385372 hybridization