Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0563 ATGGATCGCGTAGCAGTTAAGGAACAGAGCAGGTTCGAAGACATAGCAAAGCGTCTGATGATGCTGTCTCGTCTCGGAGACAATAACGTTATGAGATCAAAGCCTCAAAACAGCGTCGCAGGCTCTGTGGAATACGAGTGCAAGACATGCAAACGCAAGTTCTCGTCGTTTCAGGCTCTTGGAGGGCATAGGGCCAGCCACAAGAGACCCAGGCTCGAGGGAGATCATGAGCTGAGAGAGCTGGCTAAGTCTCTGAGCTTAGCAACTTCAAGACCCAAAGTGCATGAGTGCTCCATTTGTGGTGTGGAGTTCTCCCTGGGCCAAGCACTTGGTGGTCACATGAGACGACACAGAGCCGCCACCCTAAACGACGACGTCGTCCACGACCATCGGTTTTCTTCGAAAGTGCCAGTTTTGAAGAGATCCAATAGCAAGAGAGTTGAATTATTCTTGGACCTTAACTTGACCCCTCTTGAGAATGACTTGAAGCTCTTGTTTGGAAGCAAGGCACCTAAGATTGAAACCCTCGTCTGA 534 0.5 MDRVAVKEQSRFEDIAKRLMMLSRLGDNNVMRSKPQNSVAGSVEYECKTCKRKFSSFQALGGHRASHKRPRLEGDHELRELAKSLSLATSRPKVHECSICGVEFSLGQALGGHMRRHRAATLNDDVVHDHRFSSKVPVLKRSNSKRVELFLDLNLTPLENDLKLLFGSKAPKIETLV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0563 177 SUPERFAMILY beta-beta-alpha zinc fingers 45 117 IPR036236 -
Lele15g0563 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Lele15g0563 177 Pfam C2H2-type zinc finger 45 70 - -
Lele15g0563 177 Pfam C2H2-type zinc finger 94 119 - -
Lele15g0563 177 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Lele15g0563 177 Gene3D Classic Zinc Finger 42 117 - -
Lele15g0563 177 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Lele15g0563 177 SMART c2h2final6 95 117 IPR013087 -
Lele15g0563 177 SMART c2h2final6 45 67 IPR013087 -
Lele15g0563 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Lele15g0563 177 PANTHER ZINC FINGER PROTEIN ZAT5 9 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0563 Lele-ChrLele15 3327297 3327830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0563 7 174 C2H2 Transcription Factor Family AT2G37430 45.714 1.39e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g0563 zf-C2H2_6 7.1e-11 CL0361