Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0555 ATGGTGGGCATCGTCTCATTGATAACAGGGAGGGCGGGCCCAAGTGGGTTTGGTTCTGCTTCAACTGCGGAGGAAGTCACCAAAGGAATTGATGCCTCCAATCTCGCTGCCATTATCACAGGAGGAGCAAGTGGGATTGGCTTAGAGACAGCAAGAGTGTTAGCTCTTCGAAAGGTTCATGTGATCATTGCTGCGAGGAATATGGAAGCCTGCAAGAAAGCAAAGAAGCTTATTCTTGACCAAAACCAGTCTGCTCGTATCGATATACCGAAACTTGACCTTTCCTCTGCCAAGTCCATTGGAGCATTTGTTCTTAACTTCATCGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTTATGTTCTGCCCTTTCCAACTCTCACAGGATGGGATTGAGATGCAGTTCGCTACAAATCATATCGCCACTGGAATTGAGGGAAGGATCGTGAATCTCTCATCAGTTGCCCATAACTATACTTACTTGAAGGGGATTCGATTTGAGAAGATCAATAATCGAATTGGTTACTGTGATAAGAAGGCATATGGGCAGTCCAAGTTGGTTAACATTCTTCACTCAAACGAGCTAGCTCGCCGCCTGCAGTGGAGTTCTTCAAATCATGCACAGGAAGCAGGCGTGAACATTACAACCAACTCGGTCCACCCAGGAGGGATAATGACTCCTCTCATGAGACATTCTTCCTTCACTATGCATCTTCTGAAAGTGTTCACCTTTTACATATGGAAGAATGTCCCACAGGGAGCAGCGACATGCTATGTTGCTCTGCGCCCCAGTGTGAGAGGTGTGAATGGGAAATACTTTCAGGATTGCAATGTGCATAAGCCAAGTTCATATGCCAGAAACCAAGTGTTAGCCAGGAAATTCTGGGATTTCAGCAACACGCTGATCAATTCATTTTCCAAGGCTTAG 939 0.4558 MVGIVSLITGRAGPSGFGSASTAEEVTKGIDASNLAAIITGGASGIGLETARVLALRKVHVIIAARNMEACKKAKKLILDQNQSARIDIPKLDLSSAKSIGAFVLNFIALDLPLNILINNAGVMFCPFQLSQDGIEMQFATNHIATGIEGRIVNLSSVAHNYTYLKGIRFEKINNRIGYCDKKAYGQSKLVNILHSNELARRLQWSSSNHAQEAGVNITTNSVHPGGIMTPLMRHSSFTMHLLKVFTFYIWKNVPQGAATCYVALRPSVRGVNGKYFQDCNVHKPSSYARNQVLARKFWDFSNTLINSFSKA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0555 312 Gene3D - 28 310 - -
Lele15g0555 312 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Lele15g0555 312 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Lele15g0555 312 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Lele15g0555 312 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lele15g0555 312 PANTHER RETINOL DEHYDROGENASE 14 306 - -
Lele15g0555 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 IPR002347 -
Lele15g0555 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 IPR002347 -
Lele15g0555 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lele15g0555 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 285 IPR036291 -
Lele15g0555 312 Pfam short chain dehydrogenase 36 144 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0555 Lele-ChrLele15 3274311 3275877 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1161 06 7210157 7216213 Lele15g0555 15 3274311 3275877 CCT
Lele07g1345 07 8131965 8134821 Lele15g0555 15 3274311 3275877 CCT
Lele08g1153 08 7212649 7216152 Lele15g0555 15 3274311 3275877 CCT
Lele05g1296 05 8072172 8074974 Lele15g0555 15 3274311 3275877 CCT
Lele13g1856 13 26464271 26467587 Lele15g0555 15 3274311 3275877 hybridization
Lele14g1797 14 24832430 24835769 Lele15g0555 15 3274311 3275877 hybridization