Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0538 ATGGTTGCTGCTGTCAATCCTGTTGTTGGGTCCCATGTTTGGGTAGAGGATCCTGATGTATCTTGGATTGATGGTGACGTTTTGGAGGTTAATGGAGAAGAAATCAAAGTCCTTTGCACTTCAGGGAAGACGGTGGTTGTTAAAGCTTCCAGTATTCATCCTAAAGATACTGAGGTGCCACCATGTGGAGTGGATGATATGACGAAGCTTGCTTACCTGCATGAACCTGGAGTCCTGGACAACCTGAGAATGAGATACGATATAAATGAAATCTATACTTACACCGGAAATATATTGATTGCTGTGAACCCTTTTACAAAGCTTCCTCATCTTTATGATAGCCATATGATGGCACAATATAAAGGGGCAGCTTTTGGTGAGCTGAGTCCACATCCATTTGCTGTTGCAGATGCTGCATATAGGCTTATGGTCAATGAGGGAATCAGCCAATCAATATTGGTCAGTGGTGAAAGTGGGGCTGGTAAAACAGAGAGTACCAAATTACTAATGCGTTATCTTGCTTACATGGGAGGACGAGCAGTTGCTGAAGGTAGGACTGTTGAGCAGAAAGTCTTGGAGTCTAATCCAGTTTTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAACAATTCAAGTCGCTTTGGTAAATTCGTGGAAATTCAATTTGATCAAATGGGGAGAATTTCAGGAGCTGCGATAAGAACTTATCTTCTGGAAAGGTCACGTGTTTGCCAAGTGTCAGATCCAGAGAGAAATTATCACTGTTTCTACATGCTCTGTGCTGCACCTCCTGAGGATGTTAAGAAGTACAAGTTGGGAAAGCCAGCAGCATTTCATTATCTAAACCAAACAAATTGCTTTGAGATAGAAGGGCTTGATGAAGCTAAAGAATATAGTTCCACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCGTGTGGTGGCTGCAATTTTGCATCTTGGAAACATTGAATTTGCCAAAGGGAAGGAAATAGACTCATCTGTGCCCAAGGATGAAAAATCTAGGTTCCATCTGCAAACTGCTGCTGAGCTTTTCATGTGTGATGCAAAGGCGCTTGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGGGATGAGACAATCATAAAATGTTTGGATCCAGATGCTGCTGCACTCAGCCGAGATGCTTTGGCTAAAATTGTGTACTCTAGACTGTTTGATTGGCTGGTGGAAAAAATTAATAGTGCAATTGGTCAAGATCCTGATTCAAAGTCCCTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAAAATAACAGTTTTGAGCAATTTTGTATTAATTTGACAAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTTAAAATGGAGCAAGAAGAATACAAAAAAGAGGAGATTGATTGGAGTTACATTGAATTTGTTGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGAGGTATTATTGCTCTTTTGGACGAAGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCTCAAAAACTGTATCAGACATTCAAAAACCATAAGAGGTTCAGCAAGCCCAAATTATCACGCAGTGACTTCACAATATTGCATTATGCTGGTGATGTTACATATCAAACTGAATTGTTCCTGGACAAGAACAAAGATTATGTTGTTGCGGAACATCAGGCACTTCTTAATGCTTCCAAATGCCCCTTTGTATCGGATTTGTTTCCCCCGGCCCCTGAAGAATCATCCAATAAATCGAAGTTCTCTTCAATAGGTTCTCGATTCAAGCAACAATTGCAATCGCTACTTGAAATTCTCAGTGCTACTGAGCCACACTACATTCGGTGCGTAAAACCCAATAATTTGCTCAAGCCATCAATTTTTGAGAATAAAAATGTTTTGCAGCAACTGCGTTGTGGGGGAGTTATGGAGGCGATAAGGATTAGCTGTGCTGGATATCCTACTAGAAAAACCTTTGATGAATTTGCAGACAGATTTGGCCTTCTTTCACCTGAAGCTATGTATGGAAGTCCTGATGAGATCACTGTTTGCAAGAGGATTCTAGAGAAGGTTGGACTTCAAGGCTACCAGATCGGTAAAGCAAAGGTGTTTCTTCGAGCTGGGCAAATGGCAGAACTTGATACCCGTAGGACTGAGATCTTGGGAAAGTCTGCAAGCATTATTCAGAGGAAAGTTCGCTCCTTCTTGGCACGCGGAAGTTTTGTCTTGCTTCAATTGTCTGCTATACAGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCATATTTATGAGGGAATGCGGCAGGAGGCTTCTAGTGTGAAAATTCAGAAGAATTTCCGTATGCATATTGCTAGGAAGGCATACAAAGATTTGTATGGCTCTGCCATTTATATTCAGACTGGTATGAGGGGGATGGTGGCCCGTTCTGAACTATGCTTTAGGAGGGAGACCAGAGCGGCAATTGTTATACAGAGCCATTGCCGGAAATACTTGGCACATCATCATTTTATGGACTTAAAGAAAGCAGTAATTAGAACACAGTGTGCATGGAGAGGAAAAGTCGCTCGACGTGAATTACGAAAGCTCAAGATGGCTGCAAGGGAAACTGGAGCTCTGCAAGCTGCCAAAAATAAGCTCGAAAAGCAAGTTGAAGATCTTACATTAAGGTTGCAGTTGGAGAAACGATTGAGGGTTGACATGGAAGAAGCAAAAACACAAGAAAACGAACGATTACAATCTTCTTTGCAAGAGATGCAACTTCAGTTTAAAGAGACTAAAGTACTGCTTGAAAAGGAGCGTGAGACTGCAAAAAGGGAAGCAGAGAGAGCTCCTGTGATACAGGAGATTCCTGTTGTTGATAATGCGTTGCTGGAGAAGCTCACTAGTGAGAATGAGAAACTCAAGACCTTGGTGAGTTCACTTGAAAAGAAAATCGATGAAACCGAGAAAAGGTTTGAAGAGGCAAACAAAATTAGTGAAGAACGAACAAAGCAAGCATTGGAGGCAGAATCAAAGATAATTCAGTTGAAGACTGCTATGCAAAGGCTTGAAGAAAATTTTTTTGATGTTGAATCTGAAAATCAGATTCTTCGGCAACAATCTTTGCTAAACTCGAATGTAAAGAAAATGTCAGAGCACCTCTCAACAACTCCTTCAGATGAGCTGGAGAATGGTCACCATGTGATGGAAGAGCAAAAAGTTGTTGAAGCACAGGCTTGCACAACACCAGTTAAAAAGTTTGGTACAGAATCTGATAGCAAATTAAGGAGATCATACATTGAACGTCAGCATGAAAATGTTGAAGCACTAATCAACTGTGTTAAAAAAAATATTGGGTTTATTCATGGGAAGCCTGTTGCTGCATTTACCATTTACAAATGCCTTCTCCACTGGAAATCATTTGAAGCTGAGAGGACAAGTGTCTTTGATCGCCTCATCCAGATGATTGGTTCTGCAATTGAGAATCAAGATGACAATGATCTTATGGCTTATTGGCTGACAAATACATCCACGCTATTGTTTTTGCTCCAAGAAAGTTTGAAATCTGGCAGTACAAGTGATGCAACTCCAGCTAAAAAACCACCAAATCCAACATCCCTTTTCGGAAGAATGGCTATGGGTTTTCGCTCATCCCCTTCGTCTGCCAACCTTCCTGTACCTGCACTGGACTTCGTCCGCAAGGTAGAGGCTAAATACCCTGCTTTACTTTTTAAGCAGCAGCTCACAGCATATGTGGAGAAAATATATGGTATCATTCGAGACAACTTGAAGAAGGAGTTAACACCATTCCTTGCATTATGTATCCAGGCACCTAGAACATCAAAGGGAGTGTTACGGTCTGGACGATCATTTGGTAAAGACTCTCCTATGGGTCATTGGCAGAGTATTATTGAATCCCTCAACACCCTCCTCTGTACACTCAAGGAGAATTTTATACCTCCTGTTCTCGTCCAAAAGGTCTATACTCAAACATTCTCATATATTAATGTACAACTCTTCAATAGTCTTCTTCTTCGCCGTGATTGTTGCACATTCAGCAATGGGGAATATGTAAAAGCTGGATTAGCAGAATTGGAACTTTGGTCCTGCCAAGCAAAGGAGGAGTATGCTGGATCATCTTGGGATGAGCTGAAGCACATAAGACAGGCAGTCGGATTCTTGGTCATTCATCAGAAGTACAGGATTTCCTATGACGAAATTACCAATGATTTGTGCCCTATCCTGAGTGTCCAGCAGCTGTATAGAATATGTACACTCTACTGGGATGCTAATTATAATACTCGAAGTGTATCACCAGATGTCCTTTCAAGTATGAGGGTGCTTATGGCTGAGGACTCCAATAACGCTCAAACGGATTCTTTCTTGCTGGATGATAATTCCAGTATCCCTTTCTCCGTGGATGACCTCTCCATATCACTGCAATCCAAGGAATTCTCAGACATGAAAGCAGCTGATGAACTTCTTGAGAATCCAGCCTTTCAATTTTTAAATGAGTAG 4542 0.4113 MVAAVNPVVGSHVWVEDPDVSWIDGDVLEVNGEEIKVLCTSGKTVVVKASSIHPKDTEVPPCGVDDMTKLAYLHEPGVLDNLRMRYDINEIYTYTGNILIAVNPFTKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMVNEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAVAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQMGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGKPAAFHYLNQTNCFEIEGLDEAKEYSSTRRAMDVVGISSEEQDAIFRVVAAILHLGNIEFAKGKEIDSSVPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETIIKCLDPDAAALSRDALAKIVYSRLFDWLVEKINSAIGQDPDSKSLIGVLDIYGFESFKNNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTILHYAGDVTYQTELFLDKNKDYVVAEHQALLNASKCPFVSDLFPPAPEESSNKSKFSSIGSRFKQQLQSLLEILSATEPHYIRCVKPNNLLKPSIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFADRFGLLSPEAMYGSPDEITVCKRILEKVGLQGYQIGKAKVFLRAGQMAELDTRRTEILGKSASIIQRKVRSFLARGSFVLLQLSAIQIQAACRGQLARHIYEGMRQEASSVKIQKNFRMHIARKAYKDLYGSAIYIQTGMRGMVARSELCFRRETRAAIVIQSHCRKYLAHHHFMDLKKAVIRTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDMEEAKTQENERLQSSLQEMQLQFKETKVLLEKERETAKREAERAPVIQEIPVVDNALLEKLTSENEKLKTLVSSLEKKIDETEKRFEEANKISEERTKQALEAESKIIQLKTAMQRLEENFFDVESENQILRQQSLLNSNVKKMSEHLSTTPSDELENGHHVMEEQKVVEAQACTTPVKKFGTESDSKLRRSYIERQHENVEALINCVKKNIGFIHGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNDLMAYWLTNTSTLLFLLQESLKSGSTSDATPAKKPPNPTSLFGRMAMGFRSSPSSANLPVPALDFVRKVEAKYPALLFKQQLTAYVEKIYGIIRDNLKKELTPFLALCIQAPRTSKGVLRSGRSFGKDSPMGHWQSIIESLNTLLCTLKENFIPPVLVQKVYTQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWSCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQTDSFLLDDNSSIPFSVDDLSISLQSKEFSDMKAADELLENPAFQFLNE 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0538 1513 CDD MYSc_Myo11 76 720 IPR036018 -
Lele15g0538 1513 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 PANTHER MYOSIN 54 1447 - -
Lele15g0538 1513 FunFam Myosin heavy chain 252 307 - -
Lele15g0538 1513 Pfam DIL domain 1335 1438 IPR002710 -
Lele15g0538 1513 ProSiteProfiles IQ motif profile. 783 809 IPR000048 GO:0005515
Lele15g0538 1513 FunFam Class V myosin 439 581 - -
Lele15g0538 1513 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 Gene3D - 833 882 - -
Lele15g0538 1513 Gene3D - 735 784 - -
Lele15g0538 1513 Gene3D - 785 832 - -
Lele15g0538 1513 ProSiteProfiles Dilute domain profile. 1158 1459 IPR002710 -
Lele15g0538 1513 Gene3D - 666 733 - -
Lele15g0538 1513 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 CDD MyosinXI_CBD 1109 1482 IPR037975 GO:0007015
Lele15g0538 1513 FunFam Myosin 2 312 424 - -
Lele15g0538 1513 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Lele15g0538 1513 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Lele15g0538 1513 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 Coils Coil 877 950 - -
Lele15g0538 1513 SMART DIL_2 1334 1441 IPR002710 -
Lele15g0538 1513 Gene3D - 439 623 - -
Lele15g0538 1513 Pfam IQ calmodulin-binding motif 786 804 IPR000048 GO:0005515
Lele15g0538 1513 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Lele15g0538 1513 Pfam IQ calmodulin-binding motif 761 778 IPR000048 GO:0005515
Lele15g0538 1513 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Lele15g0538 1513 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Lele15g0538 1513 SMART iq_5 805 827 IPR000048 GO:0005515
Lele15g0538 1513 SMART iq_5 782 804 IPR000048 GO:0005515
Lele15g0538 1513 SMART iq_5 830 852 IPR000048 GO:0005515
Lele15g0538 1513 SMART iq_5 853 875 IPR000048 GO:0005515
Lele15g0538 1513 SMART iq_5 734 756 IPR000048 GO:0005515
Lele15g0538 1513 SMART iq_5 757 779 IPR000048 GO:0005515
Lele15g0538 1513 FunFam unconventional myosin-Va 834 881 - -
Lele15g0538 1513 FunFam unconventional myosin-Va 785 833 - -
Lele15g0538 1513 Coils Coil 972 1048 - -
Lele15g0538 1513 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
Lele15g0538 1513 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele15g0538 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
Lele15g0538 1513 Gene3D Kinesin motor domain 65 662 IPR036961 -
Lele15g0538 1513 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Lele15g0538 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 785 IPR027417 -
Lele15g0538 1513 Gene3D - 252 310 - -
Lele15g0538 1513 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0538 Lele-ChrLele15 3143432 3158338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0538 1 1512 Myosins gene family AT5G43900 75.280 0.0 2367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0538 15 3143432 3158338 Lele15g0538 15 3143432 3158338 ECH
Lele13g1871 13 26569553 26588836 Lele15g0538 15 3143432 3158338 hybridization
Lele14g1811 14 24923760 24939667 Lele15g0538 15 3143432 3158338 hybridization