Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0536 ATGAGTTCCAAGTTCAAATGTTCCAACTTGAATGCAGTTTGCGGCTGGTGGTACGAGTCTCTCTCCACTCTCACTCTCATGCTGAATTCTGAGCTGCTGTCAACGACCACCATGTTGAAGCCGCTGTATCTTGCTGCATCCCACGCCGTGCCAACGACGTTTCGTTGCAGAAATTTCCCCTTTAGAATGTCCTCTGATGCCCCTCCTCAGCCCCCCGAAAGCCGCGTCGTCGTGGGGTGTGGAATGACTGCAGTAGATTTCCTGGCCACTGTGGATGCATATCCCAAGCCGGACGACAAGGTCAGAACCACCAGCTTCAAGATTCAAGGAGGTGGCAATGCGGGTAATGCTTTAACTTGTGCTGCTCGCCTGGGGTTAAAGCCAAAGTTGATCTCCAAGGTTTCTGATGATGCCCAAGGCAGGGGCATATTGAAGGAGCTAGAAGCTGATGGGGTGGATACATCCTTTTTTGTTGTCTCCAAGGACGGTAGTTCAACACTTTCATACGTGCTTGTGGACAACCAAACAAAATCTCGCACATGCATTTATACCCCTGGAGACCCTCCCATGATGCCAACTGACCTGTCCCAATCAATCCTATTATCTGCATTTAATGAAGCAAGATTAGTTTATTTTGATGGATCATCAACTGAAACTGCACTTTTTGTCGCACATGAGGCAGCCCGCAATAACATACCTATTTTAGTTGAGGGAGAATCAGTGAGGGAAGGATTGGATGAGCTCCTGGGTCTTGCTGATTATGCTGTTTGCTCTGCAAGGTTTCCGCAGGCGTGGACCCAAGCACCATCTATTCCAAGTGCACTGGTTTCTATGCTTTTAAGATTGCCAAATATCAAATTTGTGATTGTGACTCTGGGTGAAGATGGATGTATAATGCTGGAAAGAAGCATAACTGAGGGTCCTGACATAGAAGAAAGGGATGTGGACAATGTAATAGAATCCCTATATAAAGAGAAAGATGATAGTCTGATTATCCCAACTTGTATATCATCGACTATGACAAAATTAAGAGCAGATGGAATTGGGACTCTGTGTGGACGTTTATTTGTTGGAACAGCAGAGAAGATACCGGCTTGTGAACTGACCGATACAACTGGTGCTGGGGATGCATTTATTGGAGCTATTCTTTATGCTATCTGTGCAAACATGTTACCTGAGAAAATGTTGCCATTCGCCTCTCAAGTGGCAGCTGCCAAGTGTAGAGCTTTGGGTGCTCGAACAGGTCTTCCTCACCACACTGATCCACGCTTGGCATCGTTTTTAAGCTAG 1290 0.4636 MSSKFKCSNLNAVCGWWYESLSTLTLMLNSELLSTTTMLKPLYLAASHAVPTTFRCRNFPFRMSSDAPPQPPESRVVVGCGMTAVDFLATVDAYPKPDDKVRTTSFKIQGGGNAGNALTCAARLGLKPKLISKVSDDAQGRGILKELEADGVDTSFFVVSKDGSSTLSYVLVDNQTKSRTCIYTPGDPPMMPTDLSQSILLSAFNEARLVYFDGSSTETALFVAHEAARNNIPILVEGESVREGLDELLGLADYAVCSARFPQAWTQAPSIPSALVSMLLRLPNIKFVIVTLGEDGCIMLERSITEGPDIEERDVDNVIESLYKEKDDSLIIPTCISSTMTKLRADGIGTLCGRLFVGTAEKIPACELTDTTGAGDAFIGAILYAICANMLPEKMLPFASQVAAAKCRALGARTGLPHHTDPRLASFLS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0536 429 Gene3D - 75 414 IPR029056 -
Lele15g0536 429 Pfam pfkB family carbohydrate kinase 361 417 IPR011611 -
Lele15g0536 429 Pfam pfkB family carbohydrate kinase 81 302 IPR011611 -
Lele15g0536 429 SUPERFAMILY Ribokinase-like 77 419 IPR029056 -
Lele15g0536 429 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 63 428 - -
Lele15g0536 429 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 370 383 IPR002173 GO:0016773
Lele15g0536 429 PRINTS Ribokinase signature 79 100 IPR002139 GO:0016301
Lele15g0536 429 PRINTS Ribokinase signature 106 125 IPR002139 GO:0016301
Lele15g0536 429 PRINTS Ribokinase signature 288 299 IPR002139 GO:0016301
Lele15g0536 429 CDD ribokinase_group_B 76 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0536 Lele-ChrLele15 3128689 3133700 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0536 15 3128689 3133700 Lele05g1315 05 8241584 8247532 CCT
Lele15g0536 15 3128689 3133700 Lele06g1176 06 7356773 7361083 CCT
Lele15g0536 15 3128689 3133700 Lele07g1364 07 8289353 8293534 CCT
Lele15g0536 15 3128689 3133700 Lele08g1167 08 7342178 7346701 CCT
Lele13g1873 13 26598546 26603051 Lele15g0536 15 3128689 3133700 hybridization
Lele14g1813 14 24953851 24958751 Lele15g0536 15 3128689 3133700 hybridization