Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0530 ATGGCTACTCAGGGTCAAGTAATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCATTGACTATTGAAGACGTTCAGGTGGCCCCACCGCAGGCTGGTGAGGTTCGAGTCCAGATTCTTTACACCGCTCTCTGTCATACCGATGCTTACACTTGGAGCGGTCAGGATCCAGAAGGTCTCTTCCCGTGTATTCTTGGTCATGAAGCTGCCGGGATTGTAGAAAGTGTTGGAGAAGATGTTACTGAGGTTCAGCCTGGAGATCATGTCATCCCCTGTTACCAGGCTGAATGCAGAGAATGCAAGTTTTGCAAATCTGGCAAAACAAACCTTTGTGGCAAAGTTCGTTCTGCCACTGGAGTTGGTGTCATGCTGAGTGACCGCAGGAGTCGTTTCTCTGTTAATGGAAAGCCCATCTATCATTTTATGGGAACCTCAACTTTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGATCCACAAGCTCCTCTAGAGAAAGTTTGTCTTCTTGGATGTGGTGTCCCTACTGGTCTTGGAGCTGTCTGGAACACTGCAAAGGTTGAACCAGGTTCAATTGTAGCTATTTTTGGCCTTGGAACTATTGGGCTTGCTGTTGCAGAGGGTGCAAAAGCTGCTGGTGCATCACGGATCATTGGCATAGACCTTAACAGCAAAAAGTTTGATATAGCAAAGAACTTTGGCGTAACTGAATTTATTAATCCGAAAGATTACGACAAACCAATTCAGCAGGTCATAGTTGATCACACAGACGGTGGAGTTGATTATAGTTTTGAATGCATTGGAAATGTCTCAGTGATGAGGTCTGCTTTGGAATGCTGCCATAAGGGCTGGGGGACATCGGTTATTGTGGGTGTTGCAGGATCAGGACAAGAAATATCAACTCGCCCTTTCCAGTTGGTGACTGGCCGTGTTTGGAAGGGAACTGCTTTTGGTGGCTTCAAGAGCCGCTCACAAGTTCCTATGCTTGTAGACAAGTACATGAAGAAGGAAATCAAGATCGATGAGTACATTACCCATAAATTAACTCTTTCGGAGATCAACAAAGCATTTGATCTTTTGCATGAAGGGGGATGCCTCCGATGCGTGCTTGCTGTGGATGTGTGA 1140 0.4596 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQILYTALCHTDAYTWSGQDPEGLFPCILGHEAAGIVESVGEDVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGVMLSDRRSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTIGLAVAEGAKAAGASRIIGIDLNSKKFDIAKNFGVTEFINPKDYDKPIQQVIVDHTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAGSGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPMLVDKYMKKEIKIDEYITHKLTLSEINKAFDLLHEGGCLRCVLAVDV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0530 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Lele15g0530 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Lele15g0530 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Lele15g0530 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Lele15g0530 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
Lele15g0530 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Lele15g0530 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Lele15g0530 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Lele15g0530 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Lele15g0530 379 Pfam Zinc-binding dehydrogenase 206 327 IPR013149 -
Lele15g0530 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Lele15g0530 379 Gene3D - 13 372 - -
Lele15g0530 379 Gene3D - 182 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0530 Lele-ChrLele15 3094996 3098046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0530 10 331 Monolignol Biosynthesis Gene Families AT1G72680 27.660 2.41e-17 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1189 06 7471130 7480201 Lele15g0530 15 3094996 3098046 CCT
Lele07g1381 07 8395248 8403696 Lele15g0530 15 3094996 3098046 CCT
Lele08g1183 08 7466075 7475286 Lele15g0530 15 3094996 3098046 CCT
Lele13g1879 13 26633010 26636438 Lele15g0530 15 3094996 3098046 hybridization
Lele14g1816 14 24973621 24986104 Lele15g0530 15 3094996 3098046 hybridization