Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0513 ATGGCAGCACGCACTACTTCCTCCATTGAAAGATCAAGCACTAAACAACTCAATAATATGTGCATGTCTGGACCGTTGCCGTCATCCTTGTCAGTCCTTCCAATGCCGATAGGAGAGACGTTTGCCAAGTTTTCTGATTCTCAGCCGGCTGTCATGGCAAAAGAGCTTATGACTGGGCCTACAACTGAGCCGAGTCATTTAAATTCCAATGGAGCAGTTGGGCACATGTTTTCATCTTCCCCTGGATATTTAACTGATCTTCATCATTCATCTCTTTCGCCTCATGAAAAACACTCAACAAGTGCTCATTTCATTTCACAGTCATCCAGCAACACGGCTTCATTGCCATTTTCTTATTCTTCCAATAGTGGACAGCTTCCTTCTTCAACACCAAATAATTATTTCAAAGAAAACAGTGCTTCCTGGAATATAGAACCCCTGCCTAACTTTCTTGATTTCCCTGTAAATACTACCATTGAGAATGGTCAAGCAGCTAACAGCGCCTGCAATGTCATGGCATCTGAGGAGTATGGTAAGCGAAATGAATGGCAAGAGTGGGCTGACCAGCTTATAAGTGAAGATGACCCTTTGACTTCTAATTGGAATGACCTTCTTATTGACAACGTTCAAGATCTTGAACCAAAGGTTGAGGTGGGATTACAAGATTCACATATTCCAGGAAACCAGTCCCAATGTCAGCAGCTACTTCCTGCTTCATCTGGAGACAATGGCTTCGGTGCTCCCCCAGCTTCCTCGGCAAGTTCTGCTCCTGCCAAGCCACGGATGCGTTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAACAAACTTGGTGGCAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAGGGATTAACGATATATCATGTTAAAAGTCACTTGCAGAAATACAGGACTGCTAGATATAGACCGGAACCATCTGAAGGATCCTCGGATAAACGACTAACTTCCATTGAAGATATGCCTCCTCTAGACTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAGCAACTTGAGATTCAACGAAACCTACAACTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAATGCAAATCTGACGCTGACAAGAAGGCATCATCAGCATCTGCCACAGAGAATCCATCTGGAGTGCCCTCAGATGCTATCAAAGATTGTCCTGCCAAAGGTGACGTGGAAGCCTCCCAATTGGAGGGCGATTGCAAGTCAGGACGTGATCAAGTCAATAGCAGTACTGCAGCTGAGGAAAGCTCTATGAAGAATGATGGCCCTAAAAGTCAAGCTTCTGAGAATCCTAAGCAACAAACCAGTGAAGAGAGTGGTCCTGCCTCAAAGAGGCAGAGAACAGAGGAGTAA 1449 0.4527 MAARTTSSIERSSTKQLNNMCMSGPLPSSLSVLPMPIGETFAKFSDSQPAVMAKELMTGPTTEPSHLNSNGAVGHMFSSSPGYLTDLHHSSLSPHEKHSTSAHFISQSSSNTASLPFSYSSNSGQLPSSTPNNYFKENSASWNIEPLPNFLDFPVNTTIENGQAANSACNVMASEEYGKRNEWQEWADQLISEDDPLTSNWNDLLIDNVQDLEPKVEVGLQDSHIPGNQSQCQQLLPASSGDNGFGAPPASSASSAPAKPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPEPSEGSSDKRLTSIEDMPPLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSDADKKASSASATENPSGVPSDAIKDCPAKGDVEASQLEGDCKSGRDQVNSSTAAEESSMKNDGPKSQASENPKQQTSEESGPASKRQRTEE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0513 482 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 228 470 IPR044848 GO:0003700
Lele15g0513 482 MobiDBLite consensus disorder prediction 313 336 - -
Lele15g0513 482 FunFam Myb family transcription factor 258 316 - -
Lele15g0513 482 Pfam Myb-like DNA-binding domain 261 312 IPR001005 -
Lele15g0513 482 MobiDBLite consensus disorder prediction 237 259 - -
Lele15g0513 482 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 259 313 IPR006447 GO:0003677
Lele15g0513 482 MobiDBLite consensus disorder prediction 433 473 - -
Lele15g0513 482 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 316 IPR017930 -
Lele15g0513 482 SUPERFAMILY Homeodomain-like 257 313 IPR009057 -
Lele15g0513 482 Gene3D - 258 317 - -
Lele15g0513 482 MobiDBLite consensus disorder prediction 392 482 - -
Lele15g0513 482 Pfam MYB-CC type transfactor, LHEQLE motif 344 391 IPR025756 -
Lele15g0513 482 Coils Coil 347 367 - -
Lele15g0513 482 MobiDBLite consensus disorder prediction 313 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0513 Lele-ChrLele15 2998325 3001155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0513 9 388 G2-like Transcription Factor Family AT4G28610 48.849 1.93e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele15g0513 Myb_DNA-binding 4.9e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1343 05 8432276 8438837 Lele15g0513 15 2998325 3001155 CCT
Lele13g2363 13 29343130 29352612 Lele15g0513 15 2998325 3001155 CCT
Lele15g0056 15 331728 341994 Lele15g0513 15 2998325 3001155 CCT
Lele16g0058 16 369675 373629 Lele15g0513 15 2998325 3001155 CCT
Lele13g1895 13 26716916 26719753 Lele15g0513 15 2998325 3001155 hybridization
Lele14g1833 14 25068165 25071046 Lele15g0513 15 2998325 3001155 hybridization