Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0495 ATGGAGGAAGACGAAGACAGAATTTTGCTTAGTAGTTTGGGCGTAGAGTCTGCCAATCACGAATGGGTTGAAAGAGACGTATTAGCTGAGGCACAGAATGATGTGGTGACCATTACTGAAGCTGATGGGAACTCAAAGGAAGAATCTCCTCAGAAATATAAAAATGTTGACCCATCATCTATTAGCAAAGCAGAACTTTATCATAAGTTGAGAGCAGTAGATTTTGAAATAAATGCAGTTGCTTCCACTATCCAACAAGTGAGAAATGTTGAGAGTAATGGAGATTGTATTGATGGGGGTGCTGACAACGGGGAGAAAGGGACTACCAAGGATACTTCCTCCAATGATTTGAATCTTCAACATGTTCTGGCTGCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTAGAAAAAGAGCTTTCAGATTTGTTCAAGGAGAAGCCTTGCAAAAGTATTGATAGGGAGAAAGAGAATGAGATCTTTAATTTGGTTAAGGAAGAGCGAAGACCCAAGAGGAAGCCTAAAGAAGTTAAAAGTTTACCGAAAGGCTCAGGCTCAGGGAAACGGCATAAAGCAGTTTCATTTAATGATGATGTTGATTTTGACGCAGTTTTAGATGCTGCCTCGGCAGGCTTTGTTGAGACAGAAAGAGATCATTTGGTAAGGAAAGGGATTTTGACACCATTTTCTAACCTGAAGGGCTTTGAGCGCCGCTTTCAACAGTCAGAAACATGTAGCAGTTATCGTGCGAGTCAAGAAGAAAGGACTGATTATCTTGCTTCTTCTAGTCTTGAAAGAGCTGCCCAATCAATATCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGTTGCTTGAATCTGAAGACCTGCCTAAGCTTGACACACCCACTCATCCTTTTGTCAGACTCAAAGTACCACTAAAACTTCCTCAGTCCCGAGAAAGAGAGCTAGAGAAGAAAAATAATTTGAAAAAGCAAAAAAGGCGACCTTTGCCTGGCAGGAAATGGACAAAGCGTGTTTCTAGTGAGGAAATACATTCAAGAGAGACTGAGGAAGCAAGTGGTTGCCTGGACTCTTCCAGTTGTGAAAATACAGATGCTCAGGATTTTGAATGTGCTAATCATGAACCTTCTTTTATAACATTAGAAGGTGGGCTGAAAATCCCTGATAATATTTTTGATGCACTATTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGGGATGAGATGGGTCTTGGTAAAACCATCCAGGTTTTATCTTTTCTTGGTGCATTGCATTTTAGTGGAATGTATAAACCAAGCATTATCATTTGTCCTGTGACCCTCTTGCGACAGTGGAAAAGGGAAGTTCACAAATGGTACCCAAAGTTTCATGTAGAGCTTTTACATGATTCTGCACGAGATTCTAATGTTAGAAAGGAGAAATCCAAATGTGATGAATCAGACTGTGATAGTAATAGTTCAAGTGACAGTGACTACGAGACCAATATTCAATCAAAAAGCACAAGAAAATGGGAATCCCTGATAAGTCGTGTAATGAGAGCGGATTATGGATTGCTTATCACAACATATGAGCAGCTCAGAATATTGAGGGACCTGTTACTCGACATTGAATGGGGTTACGCAATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAATTACCCTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGCTCACCTATACAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCCGAATTTGCTGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATCTTCTTCGGCGGATGAAAGCAGATGTGGATGCCCAGCTTCCAAAGAAAACTGAGCATGTTTTATTTTGTAGTCTTAGTACTGAGCAAGTATCTGCTTATAGAGCATTTTTGGCAAGCTCTGAAGTGGAGCAAATCTTGGATGGACGGAAGAATTCTCTTTATGGAATTGATATAATGCGTAAGATTTGCAACCACCCTGACTTGCTTGAAAGGGAACATGCATTCAGCAATCCAGACTATGGAAATCCAGAACGCAGTGGGAAAATGAAAGTTGTGGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTTCTGTTTACTCAAACCCAACAAATGCTTGACATTATTGAGAATTTTTTGACCAGTTCTGGTCATAATTACCGGAGAATGGATGGAGTCACTCCCATAAAACAAAGGATGGCTTTAATTGATGAATTTAATGAGTCAAGGGAAGTATTTATATTCATTTTAACAACCAGAGTTGGGGGCTTGGGGACGAATCTTCCTGGTGCAAACAGGGTGATTATCTTTGACCCTGACTGGAATCCTTCAACTGACATTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACGGGATGTGATAGTATATAGGTTGATCACTCGCGGAACTATAGAGGAGAAAGTTTATCACCGTCAGATTTACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAGAGATTCTTTAGAGCTCGAGATATGAAAGATCTTTTTATTCTGAATGTGGATGACAAAAGTGGGTCAACTGAAACGTCAACTATTTTCAGTCAAATATCTGAAGATGTAAATATTGTTGGGGCACATGAAGATAAGCAGGATCAGCTTAAACATCCCCAAACTTCTGAACCAGGTTCTGATGATGTTATAGTTAATAATGATGGCAGGTCAAAAACAAGATCAGCCAAGGGAAAGGGAAAAGAGAAAACAGATCGTCTTGATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCCATGGGTTACATAGTGCTGTGAACCATGATTTGATCATGAATGCCAATGAGGAGGAAAAGATGAGGCTTGAGGAGCAAGCTTCCCAGGTTGCAGAGAGAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTCCGAAGTCGCGACGGCATTGCTGTTCCTACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTTTTTGTCGAAAGTTTGGTTCAACCGTGAATTCCCAGTTGGTAAGTAATCGCAAAGAATCTGATGAATCAGCTGGTGATGGAACTAGAAGATTAAATGGATCTGCTGCTGGGGCATCATCTGGTAAGGCATTATCTTCTGCTGAACTTTTGGCTCGAATCCGGGGTAATGAAGAAAAAGCCATTGGTGCTGGGCTAGAACATCAGTTTGGTAGGGCTGTTGACCTATCCAATCAAGCAAGATCTGTCGATGTTGGATCCTCTAGGGCGTCTAAAAAGGTAGATGGAGTGCAACCTGAGGTGTTGATTCGGGAAATCTGTACATTTCTACAACAGAGAGGTGGACGTTCTGATTCGTCCAGCATAGTCCAGCATTTTAAGGACAGGATACCCTCGACAAATCTTGCCCTGTTCAAGAATCTGTTGAAGGAAATAGCAACTCTGGAAAAAGGATCAAATGGATCACGTTGGATTCTGAAGCCAGACTATCAAGAATAA 3687 0.4142 MEEDEDRILLSSLGVESANHEWVERDVLAEAQNDVVTITEADGNSKEESPQKYKNVDPSSISKAELYHKLRAVDFEINAVASTIQQVRNVESNGDCIDGGADNGEKGTTKDTSSNDLNLQHVLAADRLESLKKTKAQLEKELSDLFKEKPCKSIDREKENEIFNLVKEERRPKRKPKEVKSLPKGSGSGKRHKAVSFNDDVDFDAVLDAASAGFVETERDHLVRKGILTPFSNLKGFERRFQQSETCSSYRASQEERTDYLASSSLERAAQSISEAARARPTTKLLESEDLPKLDTPTHPFVRLKVPLKLPQSRERELEKKNNLKKQKRRPLPGRKWTKRVSSEEIHSRETEEASGCLDSSSCENTDAQDFECANHEPSFITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREVHKWYPKFHVELLHDSARDSNVRKEKSKCDESDCDSNSSSDSDYETNIQSKSTRKWESLISRVMRADYGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVDAQLPKKTEHVLFCSLSTEQVSAYRAFLASSEVEQILDGRKNSLYGIDIMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIENFLTSSGHNYRRMDGVTPIKQRMALIDEFNESREVFIFILTTRVGGLGTNLPGANRVIIFDPDWNPSTDIQARERAWRIGQTRDVIVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFRARDMKDLFILNVDDKSGSTETSTIFSQISEDVNIVGAHEDKQDQLKHPQTSEPGSDDVIVNNDGRSKTRSAKGKGKEKTDRLDEADEETNILKSLFDAHGLHSAVNHDLIMNANEEEKMRLEEQASQVAERAAEALRQSRKLRSRDGIAVPTWTGRSGTAGAPSSFCRKFGSTVNSQLVSNRKESDESAGDGTRRLNGSAAGASSGKALSSAELLARIRGNEEKAIGAGLEHQFGRAVDLSNQARSVDVGSSRASKKVDGVQPEVLIREICTFLQQRGGRSDSSSIVQHFKDRIPSTNLALFKNLLKEIATLEKGSNGSRWILKPDYQE 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0495 1228 MobiDBLite consensus disorder prediction 314 360 - -
Lele15g0495 1228 Coils Coil 1010 1037 - -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 93 114 - -
Lele15g0495 1228 Coils Coil 121 148 - -
Lele15g0495 1228 CDD SF2_C_SNF 740 865 - -
Lele15g0495 1228 Pfam SNF2-related domain 400 722 IPR000330 GO:0005524|GO:0140658
Lele15g0495 1228 SMART ultradead3 393 616 IPR014001 -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 167 185 - -
Lele15g0495 1228 FunFam Protein CHROMATIN REMODELING 8 375 657 - -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 167 193 - -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 272 298 - -
Lele15g0495 1228 Pfam Helicase conserved C-terminal domain 747 854 IPR001650 -
Lele15g0495 1228 FunFam DNA excision repair protein ERCC-6 665 943 - -
Lele15g0495 1228 PANTHER SNF2/RAD54 FAMILY MEMBER 152 1210 - -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 487 510 - -
Lele15g0495 1228 Gene3D - 376 657 IPR038718 -
Lele15g0495 1228 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 745 904 IPR001650 -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 282 296 - -
Lele15g0495 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 658 IPR027417 -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 1076 1103 - -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 939 984 - -
Lele15g0495 1228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 409 608 IPR014001 -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 966 984 - -
Lele15g0495 1228 Gene3D - 664 951 IPR027417 -
Lele15g0495 1228 MobiDBLite consensus disorder prediction 337 354 - -
Lele15g0495 1228 CDD DEXHc_ERCC6 397 607 - -
Lele15g0495 1228 SMART helicmild6 771 854 IPR001650 -
Lele15g0495 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 913 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0495 Lele-ChrLele15 2918802 2925129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0495 728 908 RAD5 or RAD16-like Gene Family AT1G11100 34.783 3.02e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele15g0495 SNF2_N 9.1e-64 CL0023