Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0489 ATGCCGTCCCTGATTTCTCCTGGGAAAATCCATCGCTTGGAGATGGAAAATTTCAAGTCTTACAAGGGTCTTCAAGTCATTGGCCCCTTCTACGACTTCACCGCAATTATTGGCCCCAATGGTGCTGGCAAGTCCAACCTTATGGACGCCATTAGCTTTGTGCTTGGTGTGAGGTCAGGTCAGCTGCGTGGTGCTCAACTCAAGGACTTAATCTATGCGTACGACGACAAGGAAAAGGAGCAGAAGGGACGGAAGGCGTTCGTTCGTTTGGTTTATCAGCTGGGCAATGGGTCGGAGATCCAGTTCACTAGGACTATCACGAGCGCCGGTGCGAGCGAGTACCGGATTGATGGGAGCCTTGTAACGTGGGATGCTTATAATGCTAGACTAAAGTCACTTGGCATTCTTGTCAAGGCTCGCAATTTCCTCGTGTTTCAGGGTGATGTGGAATCCATTGCATCGAAAAATCCGAAAGAGCTTACTGCCCTTCTTGAGCAGATATCTGGCTCTGATGAGCTCAAGAGAGACTATGAACGATTTGAAGAAGAAAAAGCCACAGCTGAAGAAAAATCAGCCCTTGTTTATCAGAAGAAGAAGACTGTAGTTATGGAGAGGAAGCAGAAGAAGGAGCAAAAGGAAGAAGCAGAGAAACATATTCGTTTGCAGGATCAACTGAGAACTGTAAAGAAAGAGCATTTCTTGTGGCAATTGTTCCATATAGAAAGAGATATTGAAAAGACGACTGATGATCTTGAGGATGAGAAAAGAAGTCGTGAAGGTGTCATGGAAGAACTGGAAAAATTTGAAGCCGAAGCTAGTAAAAAGAAGAAAGAACAGGCAAAATATCAGAAAGAGATTGCACAATGCGAAAAGAGAATTGGTGAGAAAAGCAACAAACTTGACAGGAATCAACCTGATCTTCTGAAGTTGAAAGAGGAAATGGCTCGTATTAACTCAAAAATAAAAAAAGGGAAGAAGGAGCTAGACAGAAAAAGGGAAGAACGGAGAAAACATGCTAATGATATAACAGAGCTACAGAGGGGTATACGAGATCTCACTGCCAAATTGGAAGATCTACAGGAAAAGAGTCGTGATGTTGGTGAAGAACTAAAGTTAGATGGCCGTGACTTGGAAGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTAAGGGAGGAGAAAGAACTTTTGGATAGGCAACAACATGCGGATAGTGAAGCTCAAAAGAATTTGGATGAAAATCTTCAACAATTAAGGAATAGGGAGTCTGAATTGAATTCACAAGAAGAACAGATGCGGACTAGGCTGAAAAAAATTCTTGATAATTCTACAAAACATAAGGATGACCGTGCAAATTTGAAGAAGGAATTGCGTGTGATGCAGGACAAACATCGAGATTCCAGGAAGAAATATGAAAATTTGAAGTTGAAAATTGGTGAAATAGAAAATCAACTTCGTGAACTGAGGGCTGATCGATATGAAAATGAGAGAGATGCAAAACTGTCTCAAGCTGTGGAGAGCCTCAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTTATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCCATGGGTAAATTTATGGATGCGGTTGTAGTTGAGGATGAAAAGACTGGAAAGGAGTGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCTCAGACATTTATTCCTTTGCAATCAGTTCGTGTGAAGCCAATTATTGAAAGATTGCGCACATTAGGTGGCACAGCAAAGCTTGTTTTTGATTGCAAGTTTGATCCTGCCTTGGAGAAGGCAATTCTCTTTGCCGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTGAGCTGGACTGGTGAGAGGTTCAAAGTTGTAACTGTGGATGGAGTTCTGCTGACAAAATCTGGAACAATGACTGGTGGCACTAGTGGTGGAATGGAGGCTAGGTCAAAACAGTGGGATGACAAAAAGATTGAAGGCCTTAAGAAAAAGAAAGAGCAGTATGAGTTGGAGTTGGAAGAGGTAGGATCAATAAGAGATATGCACCTTAAGGAGTCTGAAGCCTCTGGAAAAATTAGCGGACTTGAAAAGAAAATTCACTATGATGAGATTGAGGAGCAAAGTATTAAAGACAAGCTTTCAAATTTGAAGCGAGAGAAAGAGATCATCAAAGAAGAAATCAAACGGATCAGTCCAGAACTTCAGAAGTTAAATGGCACTGTTGATAAGAGGAATGCAGACATACGTAAGCTGGAGAAGAGGATCAATGAAATTACGGATAGGATTTACAAAGATTTCAGCAAGTCGGTTGGGGTTGCTAACATTCGTGAGTATGAAGAAAATCAACTAAAGTCTGCTCAAAATGTAGCCGAGGAGAGGCTAAGCTTGAGCAGCCAGCTGTCAAAATTAAAATATCAGTTGGAGTATGAACAAAATCGGGATATGACTACACGAATTAGAGAACTGGAATCTTCTTTGGGTGCTCTTGAACATGATCTAAAACAGGTACAGCACAAAGAGGCTGAAACAAAGTTGGCAGCTGAGAAAGCTACTGAAGACATTGACCAGTTGAAGGAGGAAGTTCAGGAGTGGAAATCGAAGTCAGAAGATTGTGAGAAGGATATCCAAGAGTGGAAGAAGCGTGCTTCTTCGGCCACAACAAGCATATCTAAACTTAATCGTCAGATAAACTCGAAGGAGGCCCAGATTGAGCAGTTAATTGTGCAGAAGCAAGAAATTGTAGAAAAGTGTGAACTAGAACAATTTAGCCTGCCAATTATAGAAGATCCAATGGATACTGATACTTCAATACCAGGTCCAGTTTTTGACTTTGGTGAACTAAGTAGAGCACTGAAGGATAGGAAGAACTCTGACAGGGACAAAATTGAGGTTGACTTTAAGCAAAGAATGGATGCCCTGACATCTGAAATTGAAAGAACAGCACCGAATTTGAAGGCGTTAGATCAATATGAGGCACTGCTGGAAAAGGAAAGAGCAGTAACTGAAGAGTTTGAAGCCGTCAGGAAAGAGGAGAAGGAGAAGGCTGATAGGTTCAATGCAGTTAAGCAGAAGAGGTATGAGTTGTTCATGGATGCTTTCAACCACATATCCGGCAATATAGATAAAATATACAAGCAACTTACAAAGAGCAGCACACATCCGCTGGGTGGAACAGCTTACTTAAACTTGGAAAATGAAGATGATCCATTTCTGCATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTTCGTGATATGGAGCAGCTGTCTGGTGGGGAGAAGACTGTTGCTGCACTTGCTTTGCTATTCTCCATCCACAGTTACAAGCCTTCACCTTTTTTCATATTGGACGAAGTTGATGCTGCATTGGACAACTTAAATGTTGCAAAGGTTGCTGGATTTATTCGTTCCAAATCTTGTGAGGGAGCTAGGGCTAGTCAAGATGCTGATGGTGGCAGTGGCTTTCAAAGTATCGTGATATCGTTGAAAGATAGCTTTTATGACAAAGCTGAAGCATTGGTTGGGGTTTACCGGGACTCAGAGAGAAGCTGTTCGAGAACTCTGACATTTGACCTCACCAAATACCGAGAGTCCTAA 3651 0.4202 MPSLISPGKIHRLEMENFKSYKGLQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRSGQLRGAQLKDLIYAYDDKEKEQKGRKAFVRLVYQLGNGSEIQFTRTITSAGASEYRIDGSLVTWDAYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYERFEEEKATAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHIRLQDQLRTVKKEHFLWQLFHIERDIEKTTDDLEDEKRSREGVMEELEKFEAEASKKKKEQAKYQKEIAQCEKRIGEKSNKLDRNQPDLLKLKEEMARINSKIKKGKKELDRKREERRKHANDITELQRGIRDLTAKLEDLQEKSRDVGEELKLDGRDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNLDENLQQLRNRESELNSQEEQMRTRLKKILDNSTKHKDDRANLKKELRVMQDKHRDSRKKYENLKLKIGEIENQLRELRADRYENERDAKLSQAVESLKRLFQGVHGRMTYLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGTAKLVFDCKFDPALEKAILFAVGNTLVCDDLEEAKVLSWTGERFKVVTVDGVLLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKKKKEQYELELEEVGSIRDMHLKESEASGKISGLEKKIHYDEIEEQSIKDKLSNLKREKEIIKEEIKRISPELQKLNGTVDKRNADIRKLEKRINEITDRIYKDFSKSVGVANIREYEENQLKSAQNVAEERLSLSSQLSKLKYQLEYEQNRDMTTRIRELESSLGALEHDLKQVQHKEAETKLAAEKATEDIDQLKEEVQEWKSKSEDCEKDIQEWKKRASSATTSISKLNRQINSKEAQIEQLIVQKQEIVEKCELEQFSLPIIEDPMDTDTSIPGPVFDFGELSRALKDRKNSDRDKIEVDFKQRMDALTSEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKADRFNAVKQKRYELFMDAFNHISGNIDKIYKQLTKSSTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDADGGSGFQSIVISLKDSFYDKAEALVGVYRDSERSCSRTLTFDLTKYRES 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0489 1216 Coils Coil 244 299 - -
Lele15g0489 1216 Coils Coil 198 225 - -
Lele15g0489 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1216 - -
Lele15g0489 1216 PIRSF SMC 8 1212 IPR024704 GO:0005524|GO:0016887
Lele15g0489 1216 Coils Coil 170 190 - -
Lele15g0489 1216 Coils Coil 1006 1026 - -
Lele15g0489 1216 SUPERFAMILY Smc hinge domain 481 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele15g0489 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1158 IPR027417 -
Lele15g0489 1216 Gene3D - 578 659 - -
Lele15g0489 1216 Gene3D - 783 927 - -
Lele15g0489 1216 CDD ABC_SMC1_euk 1095 1210 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Lele15g0489 1216 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
Lele15g0489 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 271 IPR027417 -
Lele15g0489 1216 Coils Coil 722 742 - -
Lele15g0489 1216 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Lele15g0489 1216 Gene3D - 232 380 - -
Lele15g0489 1216 Coils Coil 674 694 - -
Lele15g0489 1216 Coils Coil 828 932 - -
Lele15g0489 1216 Coils Coil 750 777 - -
Lele15g0489 1216 Gene3D - 8 199 IPR027417 -
Lele15g0489 1216 Gene3D - 953 1215 IPR027417 -
Lele15g0489 1216 Coils Coil 412 502 - -
Lele15g0489 1216 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Lele15g0489 1216 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele15g0489 1216 Gene3D - 496 577 - -
Lele15g0489 1216 Coils Coil 307 369 - -
Lele15g0489 1216 Pfam SMC proteins Flexible Hinge Domain 517 630 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0489 Lele-ChrLele15 2851194 2861379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0489 8 112 Structural Maintenance of Chromosomes family AT5G61460 34.821 7.24e-09 58.5