Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0482 ATGGATTCCCTTCATCAGTTCGAAAACCAAGAGCTATCATCATCCCCTGCAAATTCCAATCCCTCTGTTTCTGAAGAATCATTCAGCTGGGAAGACTTCTTCACCTTCGATTCTGTGGCAGCAATCGAATCTCAAGAAGTCTCCTCACGAGTGGAAGTGACGACAAACGCTAACACATACTCATCAATATCATCATCAACACCAGAACACCAGAGTAGTGGGAGTAAGAAAGGGAAGAGGCCGTACAGAGGAGTGAGGAGGAGGCCGTGGGGGAAGTTCGCCGCGGAGATAAGGGACTCGACGAGGAATGGGGTGAGAGTGTGGATCGGGACGTTTGACACGGCGGAGGCGGCGGCTTTGGCCTACGACCAGGCAGCTTTCTGCATGAAGGGCTCGATGGCGGTGCTGAATTTCCCGGAGCAAGTGGTGAGGGAGACCCTCGAAAGCATGGCGAGTAAGCCGTGGGAGGAAGGTTCGTCTCCTGTGTTGGCCCTCAAGAGAAAGCACACCTTGAGACTAAGGTCGTCGTCGTCGTCGTCCTCCAACCTTAAAAAACCCAGAAAGAATATTACCAGCTCCTCCAGGGAAACCAATGCCTCCAACAACGTGCTCGTGTTGGAGGATTTGGGGGCTGAATATTTGGAGCATCTCTTGAGCTTGACCTCTTCCGAGTTTGTTTCATAG 684 0.519 MDSLHQFENQELSSSPANSNPSVSEESFSWEDFFTFDSVAAIESQEVSSRVEVTTNANTYSSISSSTPEHQSSGSKKGKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFCMKGSMAVLNFPEQVVRETLESMASKPWEEGSSPVLALKRKHTLRLRSSSSSSSNLKKPRKNITSSSRETNASNNVLVLEDLGAEYLEHLLSLTSSEFVS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0482 227 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Lele15g0482 227 MobiDBLite consensus disorder prediction 174 196 - -
Lele15g0482 227 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Lele15g0482 227 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Lele15g0482 227 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Lele15g0482 227 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Lele15g0482 227 MobiDBLite consensus disorder prediction 60 84 - -
Lele15g0482 227 CDD AP2 82 141 IPR001471 GO:0003700|GO:0006355
Lele15g0482 227 MobiDBLite consensus disorder prediction 172 196 - -
Lele15g0482 227 FunFam Ethylene-responsive transcription factor 2 80 140 - -
Lele15g0482 227 PANTHER DNA-BINDING DOMAIN 35 219 IPR044808 GO:0003700|GO:0009873
Lele15g0482 227 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Lele15g0482 227 MobiDBLite consensus disorder prediction 1 24 - -
Lele15g0482 227 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0482 Lele-ChrLele15 2823323 2824006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0482 31 218 AP2-EREBP Transcription Factor Family AT2G31230 47.805 1.50e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele15g0482 AP2 7.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1384 05 8723775 8724512 Lele15g0482 15 2823323 2824006 CCT
Lele14g1858 14 25225250 25225927 Lele15g0482 15 2823323 2824006 hybridization