Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0480 ATGGCTACCTCGGACTCTGCTTTACCCGTATTCGCCATCGTTGTCCTCAGCATCATGGCCACGGCTTTCGTGCTCATCGGCTACTTCACTTTCGTCACCAAATGCTGCTCTTACTGGCACCACCTCAACCCTCTCACATGGCTCTCCATTCTGCGTCCCAGACACAGCGAAGAACCCTTCATAGCTCTCTCACCCACCATGTGGAATCGCGGCCTTGATGAATCCATCATCCGAGAAATACCCACATTCCAGTTCGTCAAAGGCGAGGATCATGACGGTAGTTTGAGCACTGTGTATGGTTGTGTGGTGTGTTTGAGTGAGTTTCAGCAACAGGACATGCTCAAAGTTCTACCCAAATGCAGCCACGCTTTTCATTTTGACTGTATCGATATTTGGCTTCAGAGCAACGCGAATTGTCCTCTTTGCAGATCAACCATTTCTGGCACCACGCGTCCTCCATTGGACCATATCATAGCACCGAGCTCTTCTCCTCAGGATTCTCAGTTGGTCTCCAATATGGCCACTGATGAAGACTTTGTGATCATTGAATTGGGGGGAGAAGATGGCGGATCACTGTCGCTGAGGCGACATGAACGGAATCAGTCAAGCAGGGGAAGCTTGGCACAGAGTACAAGTCACTGTACGAGGAAGATGAAATCCAGGAAGTGGCAGCGTATGTCCATCATGGGAGATGAGTGTATTGATACGAGGAAGAAAGATGAACAGTTCTGTATTCAGCCCCTCAGGAGATCTTTCTCCATGGATTCCGCAAATGATAGGCAAGTTTACTTGGAAGTTCGAGCCATTACGCAGCAGCCAAACAGGCATCAAAACGAGGCTAGTTGGAGTGGAGAAAGTAACGGTAACAGCAGAGGTCGAAGGTCTTTCTTTCCATTTCGTTACGGTCGTGGATCCAGAAACGCAGTGCTTCCTCTGGAGAATGAGGCGTGA 951 0.4932 MATSDSALPVFAIVVLSIMATAFVLIGYFTFVTKCCSYWHHLNPLTWLSILRPRHSEEPFIALSPTMWNRGLDESIIREIPTFQFVKGEDHDGSLSTVYGCVVCLSEFQQQDMLKVLPKCSHAFHFDCIDIWLQSNANCPLCRSTISGTTRPPLDHIIAPSSSPQDSQLVSNMATDEDFVIIELGGEDGGSLSLRRHERNQSSRGSLAQSTSHCTRKMKSRKWQRMSIMGDECIDTRKKDEQFCIQPLRRSFSMDSANDRQVYLEVRAITQQPNRHQNEASWSGESNGNSRGRRSFFPFRYGRGSRNAVLPLENEA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0480 316 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lele15g0480 316 Pfam Ring finger domain 101 143 IPR001841 -
Lele15g0480 316 SMART ring_2 101 142 IPR001841 -
Lele15g0480 316 PANTHER RING-H2 FINGER PROTEIN ATL16 4 313 IPR044600 GO:0016567|GO:0016740
Lele15g0480 316 MobiDBLite consensus disorder prediction 191 221 - -
Lele15g0480 316 FunFam E3 ubiquitin-protein ligase ATL6 62 149 - -
Lele15g0480 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 148 IPR013083 -
Lele15g0480 316 SUPERFAMILY RING/U-box 85 147 - -
Lele15g0480 316 MobiDBLite consensus disorder prediction 270 289 - -
Lele15g0480 316 CDD RING-H2_PA-TM-RING 101 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0480 Lele-ChrLele15 2815098 2816048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0480 2 276 C3H Transcription Factor Family AT1G04360 42.718 2.18e-71 224