Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0478 ATGGCCACGAACATACGTCAATTACTCAGAAGCCTCTGTTTAAATACTGACTGGAAGTACGCCGTCTTTTGGAGACTCAAACATGGGGGTCGGATGATCCTAATATGGGAGGATGGTTACTATGACAATCCTGATGATTATGATTCTTTAGATAATGAGTGCCGCCAGAAGACCATGGAACAGTTTCACAGTGGTATTGTTGGACAGGTAGCTCTCACTGGGAACCATCAGTGGATCTATGCGGATGATCATGCTACGAGTTCTGGTTTGTCCTTTGAGTTTGCTGATGGATGGCAATCTCAGTTTTCTGCTGGAATTAGGACAATTGCTGTTGTAGCTATTACCCCACATGGAGTTGTTCAACTTGGCTCCTTAAATAAACCAGATGTACCAACAACAAAATTGTCTTCAGAAATTGGACCCGCTTGCTTACATGATACAGAGGAAACCACGAGGGGTGAAAAACTGGATATTTTAATGCCCTTTTCATCATGTTCTTCAAAGAACCTTCCACCTTCTGTTTATCAGAAAATGGCTGTTGATGTGACCAAATATGGAGGGCCTGAGTTTCGCAGTGATGAAAGTTCGGTTTTGTTCACGTCAGTATTAAATATGATGGATGTGGAGCATCCGAAATTTGTAGATATGAGACCTCTAAATGAGAAGTTTGAAGGGAGCTCTGTAGGTCCATCTGAAAAAATTAGAGCTGGTTTGGGCTGCTCGTCTTCAGACTTTCATGATGTTGTTTGTGAAGGTGATAAGTTGCGTTATTTAAATATTAGCCAGAAAGAGGCGTTGACCCTTCCCAGATCTTCAGATGCAAGCTCCCAAAAAGATACAGAAAAGTCGGAGTTTGAGGCTGCACCTTCTTACCACGGTACCTCAAATACATTGTTGAAATTCCCTGCTGGCTGTGAGCTTCATGAAGCCCTTGGACCAGCTTTTGTGAAAAGTGGATATTTTGATTCAGAGGGACATGTGAATGAGGATCTTACAATGATGGAGATGCCAGATGAAATTAGCCGTAGCCAGTTGACTCATGAATCTTGTCCGGAGCATCTTTTGGAAGCAATAGTAGCCAATGCTTGCCATAGTAATAATGACATTAAGAGTGAACTGTCATACTCTGCATCAGGGCAGTCTGCAATGATATCTGAAAGAAATCCTGAAGCTTCCATGCACACTGCCCCTGCTATTAATTCAGAAGGCTATTCAATAGAGTCTTCTCTTGTAAGAGAGGACATATTCCACTCTTTGACTTCATCATCATGTCCTAGTTCATGTAGTGAACGGTTTGAAAGATCTTCTGAACCTGGTAAAAACAAGAAGAGGGCTAGGCCTGGGGAAAGTGGTAGGCCTAGACCAAGGGACAGACAACTGATCCAAGATCGTATTAAGGAGTTGAGAGAATTGGTGCCAAATGGGGCAAAGTGTAGTATTGATTCACTACTGGAGCGCGCAATAAAGCACATGCTTTTTCTGCAGAGCATTACTAAGCATGCTGACAAGCTAAATAAATTTACTGGTTCAAAGACAAAGTTGCATCACTTGGAATCAGCTGTTGCTGGATCCTCTAGCTATGAACAGGGTTCGAGTTGGGTGATGGAAGTAGGCGGTCATTTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGTAAGAATGGACATATGCTTGTTGAGATGCTTTGTGAGGAGTGCAGCCATTTTCTGGAAATAGCAGAAGCCATAAGGAGCTTGGGCCTGACAATCCTGAAAGGTGAGACAGAAGCTCATGGTGAGAAGACATGGATATGTTTTGTGGTTGAGCTTCGGGGTTCAGGGGACCGTCCTGGAAGTCAGAGTAAGGTGTTCCTCCAATTTGCGGCTTTGGATACGAAGAGGTCTCCGTTGCAGAAATACCTTACCCGTATGCCTCTAAATCTTGACATGAAAGCAGTTGAAGTTGCAAAGAAAGGCCAGTCTGGTGAGATACTCACTTTTGGCTTGTCTCTTGAAGAGAGGATCTTTCGACGTTAA 2016 0.4301 MATNIRQLLRSLCLNTDWKYAVFWRLKHGGRMILIWEDGYYDNPDDYDSLDNECRQKTMEQFHSGIVGQVALTGNHQWIYADDHATSSGLSFEFADGWQSQFSAGIRTIAVVAITPHGVVQLGSLNKPDVPTTKLSSEIGPACLHDTEETTRGEKLDILMPFSSCSSKNLPPSVYQKMAVDVTKYGGPEFRSDESSVLFTSVLNMMDVEHPKFVDMRPLNEKFEGSSVGPSEKIRAGLGCSSSDFHDVVCEGDKLRYLNISQKEALTLPRSSDASSQKDTEKSEFEAAPSYHGTSNTLLKFPAGCELHEALGPAFVKSGYFDSEGHVNEDLTMMEMPDEISRSQLTHESCPEHLLEAIVANACHSNNDIKSELSYSASGQSAMISERNPEASMHTAPAINSEGYSIESSLVREDIFHSLTSSSCPSSCSERFERSSEPGKNKKRARPGESGRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLNKFTGSKTKLHHLESAVAGSSSYEQGSSWVMEVGGHLKVHSILVENLSKNGHMLVEMLCEECSHFLEIAEAIRSLGLTILKGETEAHGEKTWICFVVELRGSGDRPGSQSKVFLQFAALDTKRSPLQKYLTRMPLNLDMKAVEVAKKGQSGEILTFGLSLEERIFRR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0478 671 MobiDBLite consensus disorder prediction 433 460 - -
Lele15g0478 671 MobiDBLite consensus disorder prediction 420 460 - -
Lele15g0478 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 458 500 IPR036638 GO:0046983
Lele15g0478 671 MobiDBLite consensus disorder prediction 268 289 - -
Lele15g0478 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 445 494 IPR011598 GO:0046983
Lele15g0478 671 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 57 IPR025610 -
Lele15g0478 671 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 62 127 IPR025610 -
Lele15g0478 671 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 259 602 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0478 Lele-ChrLele15 2795530 2802434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0478 1 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 37.219 5.95e-116 362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1260 06 8020091 8022201 Lele15g0478 15 2795530 2802434 CCT
Lele07g1463 07 8898844 8901898 Lele15g0478 15 2795530 2802434 CCT
Lele08g1252 08 7959544 7961669 Lele15g0478 15 2795530 2802434 CCT
Lele05g1398 05 8832877 8838981 Lele15g0478 15 2795530 2802434 CCT
Lele13g1930 13 26912682 26917817 Lele15g0478 15 2795530 2802434 hybridization
Lele14g1863 14 25243691 25249102 Lele15g0478 15 2795530 2802434 hybridization