Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0464 ATGGCGACGGAAGATCCCGCAGTAGTTGTCGAGTCTGTACCAGAACCAGCTGTTGCCGAGCCAGCTGAGGAGAAAGAGGCCGCAGATGCTGGCGGTAAGACCAAGAAAGCTAAGGAGCCAAAGCCTAAGAAGGCTGTTGCTCCTAGATCTCGAACTGCGCATCCTCCCTATGAAGAGATGATCAAGGACGCGATTGTTACGCTGAAGGAGAGGACTGGTTCTAGCCAGTACGCGATTACCAAGTTCATCGAAGAGAAATATAAGCAGCTTCCGTCCAACTTCAGGAAGATTGTGTTACTCCAATCAAAGAAGCTTGTGGCTGCCGAAAAGCTTGTTAAGGTCAAGGGCTCATTCAAGCTTCCCTCTGCTAAGTCATCAGCACCAAAGGCATCTGGGAATTCCGCTCCAGCAAAGAAGCCTGCAGCTGCTAAGCCCAAGGCCAAACCAGCTGCTAAGCCGAAGGAGACAAAATCAATCAAGGTGGCAACTAAAGCGCGTCCTAAGCCTAAGGCAGTTGCCAAGGCAAAGCCTAAAGCGGCTGCCAAGCCGAAGGCAGCTTCCAAGCCCAAAGCTGCTGCGGCGAAGTCCAAAGCTGCTCCGGCAAAGCCTAAGGCTGCTGCCTCGAAGCCAAAAGCTGCTGCTAAGCCCAAGGCTGCCGCAAGACCAAAGCCTAAGGAGAGACCAGCCAAGGCTTCGAGAACATCGACAAGGACATCCCCGGGCAAGAAGGCCCCGGCCCCTAAACCGGCACCAAAGAAGGCTGCGGCGACCAAGAAAGCTCCTGCTAAAGGCGTTAAGCCCAAGAGTGTGAAGTCTCCGGCAAAGAAGGCTTCGTCAAAGAGAGGAAGGAAGTGA 855 0.5368 MATEDPAVVVESVPEPAVAEPAEEKEAADAGGKTKKAKEPKPKKAVAPRSRTAHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKYKQLPSNFRKIVLLQSKKLVAAEKLVKVKGSFKLPSAKSSAPKASGNSAPAKKPAAAKPKAKPAAKPKETKSIKVATKARPKPKAVAKAKPKAAAKPKAASKPKAAAAKSKAAPAKPKAAASKPKAAAKPKAAARPKPKERPAKASRTSTRTSPGKKAPAPKPAPKKAAATKKAPAKGVKPKSVKSPAKKASSKRGRK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0464 284 SMART h15plus2 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele15g0464 284 MobiDBLite consensus disorder prediction 163 183 - -
Lele15g0464 284 PANTHER HISTONE H1 25 261 - -
Lele15g0464 284 MobiDBLite consensus disorder prediction 148 162 - -
Lele15g0464 284 CDD H15 52 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele15g0464 284 MobiDBLite consensus disorder prediction 117 284 - -
Lele15g0464 284 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele15g0464 284 MobiDBLite consensus disorder prediction 269 284 - -
Lele15g0464 284 SUPERFAMILY "Winged helix" DNA-binding domain 51 130 IPR036390 -
Lele15g0464 284 MobiDBLite consensus disorder prediction 18 46 - -
Lele15g0464 284 Pfam linker histone H1 and H5 family 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele15g0464 284 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele15g0464 284 PRINTS Histone H5 signature 142 156 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele15g0464 284 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele15g0464 284 PRINTS Histone H5 signature 178 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele15g0464 284 PRINTS Histone H5 signature 200 219 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele15g0464 284 FunFam Histone H1 48 133 - -
Lele15g0464 284 MobiDBLite consensus disorder prediction 1 58 - -
Lele15g0464 284 Gene3D - 49 128 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0464 Lele-ChrLele15 2685828 2686780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0464 55 122 Single Myb Histone (SMH) Gene Family AT1G72740 33.824 5.33e-06 45.1