Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0461 ATGATAGCGGAGACCGGTGCGTGGCGTAGGGATAACTTGCCGGTTAGAGGAGATAGACTGAGAAAATCCAGTGCAAAACGGGTTGAGATATGCAAACCCAACCCGCCACTACTAGGGAAGCGTGAAATTCCCAGGATTCTTGAGGATTCCAGATTAGGGCAATTCTGTGTAGTCTTCTTTTCCCCATTGTTCGCAGTCCCAGTGGATAATTGCTACTTATCTCCAGAAGCTAACATGGAGGATGTTGAAGAAGCTAACAGAGCAGCTGTTGAAAGCTGCCATAGAGTCCTAAGTCTGTTGTCTCAGCGCCAGGATCAGGTTCCTTATGGCAAATTAATGGTGGAAACTGGGGAGGCTGTGTCCAGGTTCAAGAAAGTTGTTTCATTGCTCAATAATGGTGTGGGTCTTGCAAGAGTAAGGAAGCTAAAAAAACTTCAAATCCCTTTCCCTCAAAGTATTCTCTTGGACAATCCAAATTCCAAATCAAACCATTGTCCCAAAAATCTGCTGTCTCTGCAACCTAGCTCTTCTGACAATTCAATTCAGGAGTTGGCCTCAAACACTGGAAACTCACTGTCTCTGGGAAAGTCATCTCTGGAATTGAGTTCAAATGGCAAAAATCCCCTACATCTTAGCCCTCCAGCGTCATCGCCGCACTACCACTTACTTCAGCAGCAGCAGCAGCAAAGAATATTGCTACAACAGCAACAAATGAAACACCAAGAAGAAATTATGTTTCGAAAGAACAATAGTGGAATCAATCTGAATTTTGATGGCCCTAGCTGTACGCCAACAATGTCATCTACTAGGTCTTTCATTTCTTCCTTAAGCATAGATGGAAGCGTAGCTAACTTGGATGGGACTGGGAGTGCCTTCCATGTAATTGGAGCTCCACACTCTTCAGATCAGAATTCACAACACCACAAGAGAAAGTGTTCTGGCAGAGATGAAGGGAGTGGGAAATGTTGGAGCAGTACTAGGTGCCATTGCTCAAAGAAGAGAAAGCATAGAGTGAAGAGGTCAATCAAGGTGCCTGCAATTAGCAACAAGCTTGCTGATATACCCCCGGATGATTATTCATGGAGAAAATATGGGCAGAAACCAATCAAAGGCTCTCCTCATCCTAGAGGATACTACAAGTGCAGCAGCATGAGGGGTTGCCCTGCTAGGAAGCATGTGGAGAGGTGCTTGGAAGAACCTTCAATGCTAGTTGTAACATATGAAGGTGAGCACAACCACCCTAGAATATCAGCACAATCTGCAAATGCATGA 1272 0.4481 MIAETGAWRRDNLPVRGDRLRKSSAKRVEICKPNPPLLGKREIPRILEDSRLGQFCVVFFSPLFAVPVDNCYLSPEANMEDVEEANRAAVESCHRVLSLLSQRQDQVPYGKLMVETGEAVSRFKKVVSLLNNGVGLARVRKLKKLQIPFPQSILLDNPNSKSNHCPKNLLSLQPSSSDNSIQELASNTGNSLSLGKSSLELSSNGKNPLHLSPPASSPHYHLLQQQQQQRILLQQQQMKHQEEIMFRKNNSGINLNFDGPSCTPTMSSTRSFISSLSIDGSVANLDGTGSAFHVIGAPHSSDQNSQHHKRKCSGRDEGSGKCWSSTRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLVVTYEGEHNHPRISAQSANA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0461 423 SMART WRKY_cls 355 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele15g0461 423 Gene3D WRKY domain 339 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele15g0461 423 ProSiteProfiles WRKY domain profile. 350 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele15g0461 423 Coils Coil 223 243 - -
Lele15g0461 423 MobiDBLite consensus disorder prediction 156 211 - -
Lele15g0461 423 MobiDBLite consensus disorder prediction 303 317 - -
Lele15g0461 423 MobiDBLite consensus disorder prediction 298 321 - -
Lele15g0461 423 FunFam WRKY transcription factor 65 339 416 - -
Lele15g0461 423 MobiDBLite consensus disorder prediction 156 218 - -
Lele15g0461 423 Pfam WRKY DNA -binding domain 357 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele15g0461 423 Pfam Plant zinc cluster domain 309 353 IPR018872 -
Lele15g0461 423 SUPERFAMILY WRKY DNA-binding domain 353 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele15g0461 423 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 81 420 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0461 Lele-ChrLele15 2673238 2677119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0461 79 420 WRKY Transcription Factor Family AT2G30590 55.789 6.61e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele15g0461 WRKY 4.6e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1949 13 27041687 27043661 Lele15g0461 15 2673238 2677119 hybridization
Lele14g1878 14 25361277 25363336 Lele15g0461 15 2673238 2677119 hybridization