Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0434 ATGAATCAATCGTGTCAGTCATGGGTTTATCTACCTCCACCAATTCGCCCTTACTGTTTTCTGCAACAAGATATGTTTTCTGCTGCCATGTCCAATTCTGCTTCCTTGTCTGAAGAAGCCACTGTCTTTTGTGGTACAAGAGTCCAGAACTTCACTGCATCAAGTCATATCGTTTCAAATACCATCCCTCCTCAGCAGCCTCAAAAGATAAAGAAAAAAAGAAGCCTCCCTGGAAATCCAGATCCAGATGCTGAGGTGATTGTGTTGTCCCCAAAGACCCTTCTGGCCACCAATAGATATGTGTGTGAAATCTGCAACAAGGGTTTTCAGAGAGATCAGAACCTCCAGCTACACAGGAGAGGGCATAACCTTCCATGGAAGCTGAAACAAAGGAACAGCAAGGAGGTGAAAAAGAGAGTTTATGTTTGCCCCGAGCCTTCTTGTGTTCACCACAATCCGTCGAGAGCTCTGGGTGATCTCACAGGTATCAAGAAACACTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTCACAAGTGCTCCAAAATCTACGCTGTTCAGTCAGATTGGAAAGCTCACTCCAAAACCTGTGGAACTAGAGAATATAGATGTGATTGCGGAACCTTTTTCTCCAGGAAGGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGACTCGCCGCTGATCAACTAGCTTCCACAAACCCAATGTTATTTCAATCTCTCTTCCCTTTGCAGAATCAAATAATGATGAATCCCTGGGACCCATCTCAAGGAAACCCTAACCCTAGTAGTAACATTGATGGCGTCCAAATCAAGACCGAAGCTCAGTGTTTTCAGGTCCCATCCCTCTCTTCTCCGCCATTTCTTCTAGTGCAGCAGCAGAATCAGAAGAACATGATAAACCCATTCTTAGGAACTCTCCATGTGCCCTCAATCGCCGCCACGTCGGCCCACCTTTCAGCCACTGCCCTCCTCAAAAAGGCTGCAACCGGGGGCTCCACTGCTATCACAGTGCCAGGTGCTGCCGCTGCAGCTGAAGGTGGACCACAGTCAACAATGGCTCACGTGACGCAGCCAAGCACGGGCGAGTTTGGACTCGCGACTCAACAGATCGACTCGGCGGGTCATGACTACATTGGAGGGCTCATGACCCGGAACCAGAGTCAACGTCTGACCAGAGACTTCCTCGGCCTGACCGCCGAGGTCGACAGCGGAAGAAATGGTGGCTCCGTGGACATTGGCCTGAACGCGAAGGATATGCTGATGTTCACGGGGGGCTTAGAGTATGATCAGTATCTTCCATACGATCACCATCATCACTCGCTCTTCACGTCCCAACAAGATTTTGGATCCTTCGGGACAGTCACTGCCCCGGAGACGATGTGGGGGAGCTCTTGA 1425 0.4905 MNQSCQSWVYLPPPIRPYCFLQQDMFSAAMSNSASLSEEATVFCGTRVQNFTASSHIVSNTIPPQQPQKIKKKRSLPGNPDPDAEVIVLSPKTLLATNRYVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCHKCSKIYAVQSDWKAHSKTCGTREYRCDCGTFFSRKDSFITHRAFCDALAEESARLAADQLASTNPMLFQSLFPLQNQIMMNPWDPSQGNPNPSSNIDGVQIKTEAQCFQVPSLSSPPFLLVQQQNQKNMINPFLGTLHVPSIAATSAHLSATALLKKAATGGSTAITVPGAAAAAEGGPQSTMAHVTQPSTGEFGLATQQIDSAGHDYIGGLMTRNQSQRLTRDFLGLTAEVDSGRNGGSVDIGLNAKDMLMFTGGLEYDQYLPYDHHHHSLFTSQQDFGSFGTVTAPETMWGSS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0434 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 58 415 IPR031140 -
Lele15g0434 474 MobiDBLite consensus disorder prediction 59 82 - -
Lele15g0434 474 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Lele15g0434 474 Gene3D Classic Zinc Finger 78 147 - -
Lele15g0434 474 FunFam protein indeterminate-domain 5, chloroplastic-like 154 233 - -
Lele15g0434 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Lele15g0434 474 SUPERFAMILY beta-beta-alpha zinc fingers 99 196 IPR036236 -
Lele15g0434 474 FunFam protein indeterminate-domain 12-like 79 147 - -
Lele15g0434 474 SMART c2h2final6 141 171 IPR013087 -
Lele15g0434 474 SMART c2h2final6 100 122 IPR013087 -
Lele15g0434 474 SMART c2h2final6 176 196 IPR013087 -
Lele15g0434 474 Pfam Zinc finger, C2H2 type 100 122 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0434 Lele-ChrLele15 2500934 2504611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0434 48 438 IDZ Gene Family AT4G02670 52.250 1.81e-120 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g0434 zf-C2H2 0.0032 CL0361