Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0417 ATGAGGGAGGGGCTTAGATCTCGCAAGCGATTGGAGAAGCCGGAGAGAGACGAGGTTCGTGGAAGGGGAGTATTTCAAAAGAAAGGAAGCATCATAAAACAGGATGCTCCTAATTCTGGTGGTGTTGCTTCTTCGCATGAGAGAGAGGCTTTGGACTTGGAAGTTGCGAATAAGGAAGTGGACAAAGTAGTAAAAGAGTGTGAACCGGACTGTTACATGGAGACTGGGGTTGTGTTAGTTGAGAATGAGAACAAAATAAGGGTTTTAAATTGTGGGGATAACATTGAGAGGAAGGTGAAGAAGGAAGGGGACTCAAAAGTGCAAATAGTTGGTCGAGTATTGCGCTCACAGTTGAAGAGGGCCGATGGCAAGAAATCTATTAATGAAGATAACACTGTCGTGGTGGTGAGGCAAAGTGGAGATTCTGATGGGTCTAAGAGTATACAGGTTAAGGCAGAAGAGGCAGAGACCCATGAATGCGTTAGTAGTGGTTATGAGGAGAATAAGATTAAGGAAAGCAATGGCAAATGGAAGTTGAAACGAAAGCGTGGGAGGCCCCCCAAAACAGGGATGACAATGCAGGTTGGCGAGTTGCCACGGAAGCTAGGGAGGCCACCCAAGGCTGGGCAAAATCATAAGCTTATCAGAGTGGGACGTAGTAAAAATAGAAAGCTGGGCTTTCATAAAGATAAAAAAGGTTTAACTATTAGAGAGGGTGCCAGTAGAAGTCCAACTAAACTATGCTCAAAGAAGAGATCCTTTGGGAAAAAATTAGAAGATAATTTTTCTCCTATCAAATCTGAGAACAATTTGGGAGCATCACCATTGAGATCAAAGTCTTTAAATGTTCATGTTGCTAAGAAAAGGCAAGCAAAGCAGTTGGTGAGGGATCAGATAATGGAACTGCTCATGGCTGCAGGCTGGACGGTTGACTATAGACCTAGAAATGTCAGAGATTACAATGATGCAGTTTATGTTAGTTTAGACGGAAAGACTCACTGGTCAATTACCTTGGCCTACAATAGGCTGAAGAAGCATTATGAAGATGGTGATGGCGAAGGTAAGGTGTATGGGCCAGGTTTTAAATTCACACCCATACCTGAAGAAGAATTTAAAACATTAACTAAGGTGATTAGCAAGCAAAGAAAAGACAAAAAGAAATCAAAAAAGAAAGGGGTAAAGGAAGGAGGTAAAGTTAATGGAGCCAATAAAAAAGCAAAAAAAGAAAGACGAGGGTCCGTTTCAAGCCTGGGTAAGTCAATGAAGGGGAAGAAGAGGAAACAGTCATTTCTCGAGGAGGATTATTCTGATGTAGCATCGTCTAGCAGAATGTCGATTCTGGCCAAGGATCATAAGCGACAGAAAACACAAAACAAGAAGCGTTGTGTTCTGTTGGTTCGCAATGTCGAGAAAGAGAGAGATTCAGAAGTTGATGGATATGTTCCTTACAATGGAAAACGTACTCTACTTGCCTGGACGATTGATATGGGAATGGTCTTGCAAAGTGGTAAGGTTCATTACACCAATCATAGAAGTAAAGGTGTGGCATTGGAGGGTAGGGTAACAGGAGATGGTATTCACTGTAGCTGCTGTAATGAAATCATAACAGTATTAGAGTTTGAAGCCCATGCAGGAAGCAAACTCTCTGATCCATTTAGAAATATATATACAGAGGAAGGAACTTCTCTCTTGCAATGCCTGCTAGACTCGTGGAATAAACAAGATGAATCTGAATGTAAAGGTTTTCATTTCGTTGATGTTGCTGGTGAAGACCCTAATGATGACACTTGTGGTGTCTGTGGAGATGGTGGGGACCTGATCTGTTGTGATAGTTGCCCATCAACATTCCATCAAAGCTGCTTGGGTATAAGAAAGTTTCCATTTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGTCTGGTTGGAGGTGACAGCAAAAGGGATGATGATGATCACAGATCCTGTATTGAGGTGGATTGTGCCCAGATTGATCATTCCTGTGATGGATTTTGTGGAAACAGATGTCAAGAGTTACATGAGAGACTCAATATGCTTGTTGGGATCAACCATGAAATTGGAGATGGATTTTCCTGGACTTTAATTCAGCGATCTGATGTTGGCTCAGATGCTTCTAAGATTAAATCTCAGATGGTTGAATGCAATTCCAAGCTAGCAGTTGCTGTATCGATAATGGATGAATGTTTCATGCCCTATATTGATCATAGAAGTGGGATTAATATGATCCACAGTATTCTTTATAATTGTGGCTCAAACTTCAACCGCCTGAACTATAGTGGATTTTTTACTGCCATTCTAGAGAGGGGAGATGAAATTATCTGTGCTGCATCTATTAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTGTCGGGACCCGCTCTACGTATAGGCGGCAAGGAATGTGCCGTCGTCTTCTAAGTTCCATTGAAGATGCACTGAGCTCTCTGAATGTGGGGTTATTGGTAATACCAGCGGTAGCAGAAGTCAGAGAAACTTGGACTTCAGTTTTTGCGTTTGAGCCACTTGATCCGACAAGCAATCAAATAGTAAAGAGCTTAAATCTGTTGGTGTTCCCTCATGTAGATATGTTACAGAAAAAGATACCGAAACCTAATTCTGCTGAAGAAAATCTGATCCCTGCTGAAGTTTCCAATCCTGAACTTCCCAAGAATATATGTCATGAGTTGGACTCTTCTGGAACTGAAGCAATCGTTTCTGCTGGGGTTTCTCCTCCAAATGCATGCCAGATAAATGATAAATACATATCTATTGAATCTGGCCCTCAGCGTCCTGTGGGCTCATTCAACGACTCACCTGTTTTTGATAGTGAGACTGTAAATGATGAATGTTCTGAAGTTGTAAAATGTCAAGTAATCTGTCAGGCTATGTATTCTAATCTGACAGTGGGAGACAAAAGTGCTACAGAAGGCCCTCATTATGTGAGCAAAGTTGATTATCAAGCTGAACACACAAATAAATGTCAGAATACTAATTCTGGTTGGATCATCCCAGCTCATAATGAGAAGACGGTAGATTCAGATAACCCATCAAACCATTGCCCAGGGCCTGAGAAGGGAAGTCAATATCTCACAAAATCAGATGAGATAGTTACGCATAGCAACGGTGCTGAGGATTCTGCGCGCCTCTCATCAGAAAATATTCCTCACAGATCTGAGATTGTGTCTTGTATGCGGGAATCCAAAGATTCCGATGAAATCGCATATGATAATTTGAAAATTGTAACCCCTTTGAAAGATAACGGTGGAACTTTGCATCCTGAGTCTCGGGAATTCCAGTTGGCCGAATCTGGTTTTTGTTCACATAAAAATTCCAACAGTTGTGGACCGAAAAACAACCATGACTCTGTTCAGGATCATTCGGTAGAATCTAAAGAGTTGCTTTCTGAAGAATTATCCATTAATTGCATTAAACAGTACAGTGTGGTTAGTGAGCTAAATGCTGATGAAGTTTGTGCAGCCAAGACATCCAATCTCCAGGCTGACACAAATTGTGGTGATTGCCAATCCATACAAGTGGCCTCAGCTGATAGGAAGTTAGTTCTCATTAATAACCCTTGGACGGACCACTCTTCAGAGCTGCGAGATCGTGGTTTACAGGTTGATAGATCTACGCAGCGTAATGGTTCATCCCTTTGTAGCCCAAAACCTGCTGGCGTGGCTCTTCACTGCGCATCTGCTGGTGGTACTGAGGTGATAGTTCTGTCTAACAAAGCCAGTTGA 3771 0.4206 MREGLRSRKRLEKPERDEVRGRGVFQKKGSIIKQDAPNSGGVASSHEREALDLEVANKEVDKVVKECEPDCYMETGVVLVENENKIRVLNCGDNIERKVKKEGDSKVQIVGRVLRSQLKRADGKKSINEDNTVVVVRQSGDSDGSKSIQVKAEEAETHECVSSGYEENKIKESNGKWKLKRKRGRPPKTGMTMQVGELPRKLGRPPKAGQNHKLIRVGRSKNRKLGFHKDKKGLTIREGASRSPTKLCSKKRSFGKKLEDNFSPIKSENNLGASPLRSKSLNVHVAKKRQAKQLVRDQIMELLMAAGWTVDYRPRNVRDYNDAVYVSLDGKTHWSITLAYNRLKKHYEDGDGEGKVYGPGFKFTPIPEEEFKTLTKVISKQRKDKKKSKKKGVKEGGKVNGANKKAKKERRGSVSSLGKSMKGKKRKQSFLEEDYSDVASSSRMSILAKDHKRQKTQNKKRCVLLVRNVEKERDSEVDGYVPYNGKRTLLAWTIDMGMVLQSGKVHYTNHRSKGVALEGRVTGDGIHCSCCNEIITVLEFEAHAGSKLSDPFRNIYTEEGTSLLQCLLDSWNKQDESECKGFHFVDVAGEDPNDDTCGVCGDGGDLICCDSCPSTFHQSCLGIRKFPFGDWHCIYCCCKFCGLVGGDSKRDDDDHRSCIEVDCAQIDHSCDGFCGNRCQELHERLNMLVGINHEIGDGFSWTLIQRSDVGSDASKIKSQMVECNSKLAVAVSIMDECFMPYIDHRSGINMIHSILYNCGSNFNRLNYSGFFTAILERGDEIICAASIRIHGNQLAEMPFVGTRSTYRRQGMCRRLLSSIEDALSSLNVGLLVIPAVAEVRETWTSVFAFEPLDPTSNQIVKSLNLLVFPHVDMLQKKIPKPNSAEENLIPAEVSNPELPKNICHELDSSGTEAIVSAGVSPPNACQINDKYISIESGPQRPVGSFNDSPVFDSETVNDECSEVVKCQVICQAMYSNLTVGDKSATEGPHYVSKVDYQAEHTNKCQNTNSGWIIPAHNEKTVDSDNPSNHCPGPEKGSQYLTKSDEIVTHSNGAEDSARLSSENIPHRSEIVSCMRESKDSDEIAYDNLKIVTPLKDNGGTLHPESREFQLAESGFCSHKNSNSCGPKNNHDSVQDHSVESKELLSEELSINCIKQYSVVSELNADEVCAAKTSNLQADTNCGDCQSIQVASADRKLVLINNPWTDHSSELRDRGLQVDRSTQRNGSSLCSPKPAGVALHCASAGGTEVIVLSNKAS 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0417 1256 ProSitePatterns Zinc finger PHD-type signature. 597 636 IPR019786 -
Lele15g0417 1256 SUPERFAMILY FYVE/PHD zinc finger 589 642 IPR011011 -
Lele15g0417 1256 MobiDBLite consensus disorder prediction 394 415 - -
Lele15g0417 1256 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 763 834 IPR016181 -
Lele15g0417 1256 MobiDBLite consensus disorder prediction 378 428 - -
Lele15g0417 1256 MobiDBLite consensus disorder prediction 172 193 - -
Lele15g0417 1256 CDD PHD2_CHD_II 597 636 - -
Lele15g0417 1256 MobiDBLite consensus disorder prediction 379 393 - -
Lele15g0417 1256 MobiDBLite consensus disorder prediction 1 47 - -
Lele15g0417 1256 MobiDBLite consensus disorder prediction 1210 1231 - -
Lele15g0417 1256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 689 IPR013083 -
Lele15g0417 1256 MobiDBLite consensus disorder prediction 1 24 - -
Lele15g0417 1256 Pfam Tify domain binding domain 519 568 IPR032308 -
Lele15g0417 1256 SMART PHD_3 596 637 IPR001965 -
Lele15g0417 1256 PANTHER PHD FINGER PROTEIN 12 284 1150 IPR042163 GO:0003714|GO:0045892
Lele15g0417 1256 CDD NAT_SF 774 833 - -
Lele15g0417 1256 ProSiteProfiles Zinc finger PHD-type profile. 594 639 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0417 Lele-ChrLele15 2403980 2409803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0417 108 937 PHD Transcription Factor Family AT5G36670 37.748 1.40e-178 557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1473 05 9435277 9444263 Lele15g0417 15 2403980 2409803 CCT
Lele15g0417 15 2403980 2409803 Lele15g0417 15 2403980 2409803 ECH
Lele13g1987 13 27277858 27284777 Lele15g0417 15 2403980 2409803 hybridization
Lele14g1921 14 25614602 25617272 Lele15g0417 15 2403980 2409803 hybridization