LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g0405	ATGGAAGTTAGTGCCGAGGAAGCGTCCCTCCAGAGAAGCCAGCAACTTAGGGAGCTCTATGAATCATTGTCCGCCGGAGAGACCAACCCTCCGGCTCGACGGCCTTGTGCCGCCTTGTCGCCCGAGGACCTAACCGAATCCGAATGGTTCTATTTGATGTGTGTCTCTTTCTCCTTTGCTCCTGGCGTCGGGTACCTATCTCCAGATGCTAGAGAAATTCATCTGGTGAGTCAGAGGGTGTATTGGGAGTTTGAATACGGGCTCACTGCTTCGATCATACATCCGTCAATTGTTGTTTCTAATACTTACCTGGTTTCTGTACCCACGTGCTTGTTACAACTAGTTAACCCATTTGATTCTCGATTATGCAAGAGGTTGCCGGGGAAAGCATATGCGAGGAGGCAGCATGTATGGCTTGCCGGTGCAAATGAGGTGGACAGTAAAACGTTTTCAAGGGCTATTCTTGCCAAGACCGTGGTGTGCATACCTCTGTTGGACGGCGTCGTAGAGTTTGGCACAACAGATAAGGTTCAGGAAGACCTTAATTTTATCCAGCATGTGAAGAGCTTCTTCATAAATCGCCAGCGGCAGCACCACCCTCCTCCGCCAAAGCCCGCCCTCTCTGAGCTCTCAACCTCCAACCCCACAACCTCTTCCGACGACTCCCGCATCCAGTCCACTCCCATCCCCGTTGCCATGTACTCCGCTGTGGACCCATCACCCGCCACCCCAGCCGCTCCCAACAACCACATGAATGAAGATGACGATGAGGATGATGAAGAAGAGGCCGAGTCCGACTCCGAGGCAGAAACCGTCAGGAACAACCGACCAACGCCAGCGGCGTCAGGCGTGGCAGTTGCCACTGCAGCAGAACCAAGCGAGTTAATGCAGCTGGAGATGTCTGAGGATATCCGAGTAGGATCACCGCCGGACGATGGCTCCAACAACCTCGACTCAGATTTCCATATGCTAACGGTGAGCCACCCAACGGATCACGAGCGACGAGCTGACTCGTACAGGGCCGAGTCGACCCGGAGGTGGGTCGAACCAGCGCTTCAACTACCAGCTTCAGGTACCGTGATAAGAGATCCATCTGGATATCTTGATATTCAAGGCGCTCCCCTAGAAGACCTCACGCAAGAGGACACCCACTACTCTCAAACAGTGTCCACCATCCTCCATAATCAGTCCCTCCGGTGGGCCGAATCCCGCTCCCTCGACTACATTACTTCCTCCTCTCAATCGGCTTTTGCCAAGTGGAACACCCGTGCCGACCAACACCACCTCCTCCTCCACGTCTCCCCCGACTTAACCTCTCAGTGGCTCCTCAAGTACATTTTGTTCACCGTTCCCTTCCTTCACGCCAAGTACCAAGACGACAACTCGCCCACCCCCCGCGAGGGCACCGATCCCGTCACGCGCCTCCGTGGAAAGGGAACGCCGCAGGATGAGCTGAGCGCCAACCACGTACTGGCCGAGCGACGCCGCCGCGAGAAGCTCAACGAGAGGTTCATCATACTTAGATCGCTCGTGCCCTTCGTCACCAAAATGGACAAGGCATCCATACTAGGGGACACCATCGAGTACGTGAAACAGTTGCGTAAGAAGATCCAAGATCTGGAGGCACGTAACCGCCAGATGGAAGCAGAGCAACAGTCAATGGAGCAACAGAGGAAGATGAGGATCGTGGAGGGGAGCGGAGGGATGAGGAAGCCGAAGCCAGTGGACTCGTCTCCGCCGCCATCGCCGTCGGGAGTGGTGACATCGGTGCAAGTGTCGATCATAGAGAGCGACGCACTGTTGGAATTGGAATGCGAGAACAGGGAGGGTTTGTTGCTGGACGTGATGCAAATGCTGAGAGAGATGAGGATAGAGGTGACGACGGTGCAGTCGTCACTGAACAGCGGGGTGTTCGTGGCGGAGCTGAGGGCGAAGGTGAAGGAAAATCCGAAGGGAAAGAAGACGAGCATAGTGGAAGTGAAGAGGGCGCTCAACCAAATCATACCCCACAGTGATTGA	2019	0.5498	MEVSAEEASLQRSQQLRELYESLSAGETNPPARRPCAALSPEDLTESEWFYLMCVSFSFAPGVGYLSPDAREIHLVSQRVYWEFEYGLTASIIHPSIVVSNTYLVSVPTCLLQLVNPFDSRLCKRLPGKAYARRQHVWLAGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIQHVKSFFINRQRQHHPPPPKPALSELSTSNPTTSSDDSRIQSTPIPVAMYSAVDPSPATPAAPNNHMNEDDDEDDEEEAESDSEAETVRNNRPTPAASGVAVATAAEPSELMQLEMSEDIRVGSPPDDGSNNLDSDFHMLTVSHPTDHERRADSYRAESTRRWVEPALQLPASGTVIRDPSGYLDIQGAPLEDLTQEDTHYSQTVSTILHNQSLRWAESRSLDYITSSSQSAFAKWNTRADQHHLLLHVSPDLTSQWLLKYILFTVPFLHAKYQDDNSPTPREGTDPVTRLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEARNRQMEAEQQSMEQQRKMRIVEGSGGMRKPKPVDSSPPPSPSGVVTSVQVSIIESDALLELECENREGLLLDVMQMLREMRIEVTTVQSSLNSGVFVAELRAKVKENPKGKKTSIVEVKRALNQIIPHSD	672

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele15g0405	672	MobiDBLite	consensus disorder prediction	564	586	-	-
Lele15g0405	672	MobiDBLite	consensus disorder prediction	195	287	-	-
Lele15g0405	672	SMART	finulus	490	539	IPR011598	GO:0046983
Lele15g0405	672	PANTHER	TRANSCRIPTION FACTOR TT8	1	670	-	-
Lele15g0405	672	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	486	556	IPR036638	GO:0046983
Lele15g0405	672	MobiDBLite	consensus disorder prediction	458	490	-	-
Lele15g0405	672	MobiDBLite	consensus disorder prediction	209	229	-	-
Lele15g0405	672	Coils	Coil	523	560	-	-
Lele15g0405	672	Pfam	Helix-loop-helix DNA-binding domain	487	534	IPR011598	GO:0046983
Lele15g0405	672	Gene3D	-	485	561	IPR036638	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g0405	Lele-ChrLele15	2316326	2320975	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g0405	377	670	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G09820	43.919	1.12e-59	207

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Lele15g0405		bHLH-MYC_N	3.7e-17	CL0161

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g2001	13	27363511	27368179	Lele15g0405	15	2316326	2320975	hybridization
	Lele14g1933	14	25685016	25690141	Lele15g0405	15	2316326	2320975	hybridization

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