Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0405 ATGGAAGTTAGTGCCGAGGAAGCGTCCCTCCAGAGAAGCCAGCAACTTAGGGAGCTCTATGAATCATTGTCCGCCGGAGAGACCAACCCTCCGGCTCGACGGCCTTGTGCCGCCTTGTCGCCCGAGGACCTAACCGAATCCGAATGGTTCTATTTGATGTGTGTCTCTTTCTCCTTTGCTCCTGGCGTCGGGTACCTATCTCCAGATGCTAGAGAAATTCATCTGGTGAGTCAGAGGGTGTATTGGGAGTTTGAATACGGGCTCACTGCTTCGATCATACATCCGTCAATTGTTGTTTCTAATACTTACCTGGTTTCTGTACCCACGTGCTTGTTACAACTAGTTAACCCATTTGATTCTCGATTATGCAAGAGGTTGCCGGGGAAAGCATATGCGAGGAGGCAGCATGTATGGCTTGCCGGTGCAAATGAGGTGGACAGTAAAACGTTTTCAAGGGCTATTCTTGCCAAGACCGTGGTGTGCATACCTCTGTTGGACGGCGTCGTAGAGTTTGGCACAACAGATAAGGTTCAGGAAGACCTTAATTTTATCCAGCATGTGAAGAGCTTCTTCATAAATCGCCAGCGGCAGCACCACCCTCCTCCGCCAAAGCCCGCCCTCTCTGAGCTCTCAACCTCCAACCCCACAACCTCTTCCGACGACTCCCGCATCCAGTCCACTCCCATCCCCGTTGCCATGTACTCCGCTGTGGACCCATCACCCGCCACCCCAGCCGCTCCCAACAACCACATGAATGAAGATGACGATGAGGATGATGAAGAAGAGGCCGAGTCCGACTCCGAGGCAGAAACCGTCAGGAACAACCGACCAACGCCAGCGGCGTCAGGCGTGGCAGTTGCCACTGCAGCAGAACCAAGCGAGTTAATGCAGCTGGAGATGTCTGAGGATATCCGAGTAGGATCACCGCCGGACGATGGCTCCAACAACCTCGACTCAGATTTCCATATGCTAACGGTGAGCCACCCAACGGATCACGAGCGACGAGCTGACTCGTACAGGGCCGAGTCGACCCGGAGGTGGGTCGAACCAGCGCTTCAACTACCAGCTTCAGGTACCGTGATAAGAGATCCATCTGGATATCTTGATATTCAAGGCGCTCCCCTAGAAGACCTCACGCAAGAGGACACCCACTACTCTCAAACAGTGTCCACCATCCTCCATAATCAGTCCCTCCGGTGGGCCGAATCCCGCTCCCTCGACTACATTACTTCCTCCTCTCAATCGGCTTTTGCCAAGTGGAACACCCGTGCCGACCAACACCACCTCCTCCTCCACGTCTCCCCCGACTTAACCTCTCAGTGGCTCCTCAAGTACATTTTGTTCACCGTTCCCTTCCTTCACGCCAAGTACCAAGACGACAACTCGCCCACCCCCCGCGAGGGCACCGATCCCGTCACGCGCCTCCGTGGAAAGGGAACGCCGCAGGATGAGCTGAGCGCCAACCACGTACTGGCCGAGCGACGCCGCCGCGAGAAGCTCAACGAGAGGTTCATCATACTTAGATCGCTCGTGCCCTTCGTCACCAAAATGGACAAGGCATCCATACTAGGGGACACCATCGAGTACGTGAAACAGTTGCGTAAGAAGATCCAAGATCTGGAGGCACGTAACCGCCAGATGGAAGCAGAGCAACAGTCAATGGAGCAACAGAGGAAGATGAGGATCGTGGAGGGGAGCGGAGGGATGAGGAAGCCGAAGCCAGTGGACTCGTCTCCGCCGCCATCGCCGTCGGGAGTGGTGACATCGGTGCAAGTGTCGATCATAGAGAGCGACGCACTGTTGGAATTGGAATGCGAGAACAGGGAGGGTTTGTTGCTGGACGTGATGCAAATGCTGAGAGAGATGAGGATAGAGGTGACGACGGTGCAGTCGTCACTGAACAGCGGGGTGTTCGTGGCGGAGCTGAGGGCGAAGGTGAAGGAAAATCCGAAGGGAAAGAAGACGAGCATAGTGGAAGTGAAGAGGGCGCTCAACCAAATCATACCCCACAGTGATTGA 2019 0.5498 MEVSAEEASLQRSQQLRELYESLSAGETNPPARRPCAALSPEDLTESEWFYLMCVSFSFAPGVGYLSPDAREIHLVSQRVYWEFEYGLTASIIHPSIVVSNTYLVSVPTCLLQLVNPFDSRLCKRLPGKAYARRQHVWLAGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIQHVKSFFINRQRQHHPPPPKPALSELSTSNPTTSSDDSRIQSTPIPVAMYSAVDPSPATPAAPNNHMNEDDDEDDEEEAESDSEAETVRNNRPTPAASGVAVATAAEPSELMQLEMSEDIRVGSPPDDGSNNLDSDFHMLTVSHPTDHERRADSYRAESTRRWVEPALQLPASGTVIRDPSGYLDIQGAPLEDLTQEDTHYSQTVSTILHNQSLRWAESRSLDYITSSSQSAFAKWNTRADQHHLLLHVSPDLTSQWLLKYILFTVPFLHAKYQDDNSPTPREGTDPVTRLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEARNRQMEAEQQSMEQQRKMRIVEGSGGMRKPKPVDSSPPPSPSGVVTSVQVSIIESDALLELECENREGLLLDVMQMLREMRIEVTTVQSSLNSGVFVAELRAKVKENPKGKKTSIVEVKRALNQIIPHSD 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0405 672 MobiDBLite consensus disorder prediction 564 586 - -
Lele15g0405 672 MobiDBLite consensus disorder prediction 195 287 - -
Lele15g0405 672 SMART finulus 490 539 IPR011598 GO:0046983
Lele15g0405 672 PANTHER TRANSCRIPTION FACTOR TT8 1 670 - -
Lele15g0405 672 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 486 556 IPR036638 GO:0046983
Lele15g0405 672 MobiDBLite consensus disorder prediction 458 490 - -
Lele15g0405 672 MobiDBLite consensus disorder prediction 209 229 - -
Lele15g0405 672 Coils Coil 523 560 - -
Lele15g0405 672 Pfam Helix-loop-helix DNA-binding domain 487 534 IPR011598 GO:0046983
Lele15g0405 672 Gene3D - 485 561 IPR036638 GO:0046983
Lele15g0405 672 MobiDBLite consensus disorder prediction 252 267 - -
Lele15g0405 672 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 191 IPR025610 -
Lele15g0405 672 Gene3D - 598 668 - -
Lele15g0405 672 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 484 533 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0405 Lele-ChrLele15 2316326 2320975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0405 377 670 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 43.919 1.12e-59 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele15g0405 bHLH-MYC_N 3.7e-17 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2001 13 27363511 27368179 Lele15g0405 15 2316326 2320975 hybridization
Lele14g1933 14 25685016 25690141 Lele15g0405 15 2316326 2320975 hybridization