Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0398 ATGATGAGAATCTCTATGGCGATGAGCAGGAATGTTACACAACCCCTAACCAATAGTCCTTCGGGCGGTAGAAAAATGAATCTGATCAATCTTCCGCGGCAGAAAGAGAAGGTGGTGGTGGTCATGGGAGCCACTGGCGCCGGAAAGTCCAAGCTCTCTATCGACCTCGCCACCCTTTTTCCCGTACAAATCATCAACTCCGACAAAATGCAAGTCTACAAAGGCCTTGACATAGCCACGAACAAAATCACCAACGAAGACCGACGAGGGGTGCCTCACCATTTGTTAGGAACAGAGAGCCCCGACTCAGAGTTCACGGCCTCCCACTTCCGTGACGCGGCTTTACTCGCCATCGAGTCAATTACTTCTTGCGGACAGCTTCCGATCATCGTGGGAGGATCCAACTCGTATATTGAGGCACTAATCGACGACGACGACTATAAATTCCGATCGAGGTATGATTTCTGTTGTCTCTGGGTAGACGTGTCAATGCCCGTGCTCGACCATTACGTGGCCAAGCGGGTTGATCAAATGCTGGAGAGCGGAATGGTAGATGAACTGAGACCATTTTTCAATCCAAATGGAGACTACTCAGGGGGAATTAGAAAAGCTATCGGAGTTCCTGAGTTCGATCAGTATTTTCGAAACGAATCGTTGATTAGGGATGAAGGAATCAAGCAGAGGCTAATGGAAGAAGCGGTGAATGAAATTAAGAAAAACACGTACAAATTGGCACGTAAACAATTGGGGAAGATTCAGAGACTGAGCAATGTGAAGAGATGGAAGATTCAGCGGCTGGACGCGACCACCGTGTTACGCAAGCATGGGGAAGAAGCAGAGGAGGCATGGAAGAAGATGGTGGCAGAGCCAAGTGCTATGATCGTCACCAGGTTTCTTTACGAATTTCCCTCTGCTAGCGTTGGCGCTAGCCTTAGACCGTCGCCATCTTCATCAGCATCATCGGCCCTCGAAAGCGCATGGCTACGGCAACGTGCTGAATACCCGCACCACTCCGTGTTCTGA 1023 0.4966 MMRISMAMSRNVTQPLTNSPSGGRKMNLINLPRQKEKVVVVMGATGAGKSKLSIDLATLFPVQIINSDKMQVYKGLDIATNKITNEDRRGVPHHLLGTESPDSEFTASHFRDAALLAIESITSCGQLPIIVGGSNSYIEALIDDDDYKFRSRYDFCCLWVDVSMPVLDHYVAKRVDQMLESGMVDELRPFFNPNGDYSGGIRKAIGVPEFDQYFRNESLIRDEGIKQRLMEEAVNEIKKNTYKLARKQLGKIQRLSNVKRWKIQRLDATTVLRKHGEEAEEAWKKMVAEPSAMIVTRFLYEFPSASVGASLRPSPSSSASSALESAWLRQRAEYPHHSVF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0398 340 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 164 263 - -
Lele15g0398 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 176 IPR027417 -
Lele15g0398 340 Gene3D - 35 299 IPR027417 -
Lele15g0398 340 MobiDBLite consensus disorder prediction 7 25 - -
Lele15g0398 340 Hamap tRNA dimethylallyltransferase [miaA]. 38 273 IPR018022 GO:0008033
Lele15g0398 340 FunFam Adenylate isopentenyltransferase 5, chloroplastic 164 263 - -
Lele15g0398 340 Pfam IPP transferase 150 249 - -
Lele15g0398 340 Pfam IPP transferase 71 144 - -
Lele15g0398 340 MobiDBLite consensus disorder prediction 1 26 - -
Lele15g0398 340 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 35 299 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0398 Lele-ChrLele15 2289133 2290155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0398 151 337 C2H2 Transcription Factor Family AT2G27760 30.734 1.26e-24 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1503 05 9628194 9629195 Lele15g0398 15 2289133 2290155 CCT
Lele15g0398 15 2289133 2290155 Lele15g0398 15 2289133 2290155 ECH
Lele13g2006 13 27392175 27393173 Lele15g0398 15 2289133 2290155 hybridization
Lele14g1941 14 25722144 25723136 Lele15g0398 15 2289133 2290155 hybridization