Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0370 ATGGCTTGCGAAAATGTGAACGGGAGGTGGTTTTCGATTTCGAATTGCCGTATTGAATCTATATGCCACTCTGTATGTATGCTTGTAGTAGTTGATTTTTGCTTGGAAAGGGAAACCGTGTCGTTGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGATTCGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGCCGATGGTTTGAGACAGAGTTGTTGGGCTAATATGCCCCCAGAGCTTCTGAGGGATGTGTTAATGAGGATCGAGGCCTCTGAAGATAGATGGCCTGCCCGAAAACATGTGGTTGCTTGTGCTGGTGTCTGCCGAAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACCCTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTTCAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATCTGTACCTCAGTTTAAACCAAGCTTCAATCGATGATTGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCGTCTCTATAAACTGCGATGATGTATCAAGAGGGAGTAGCACTTACATTGGAAAATTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGATGCGCACCCTCCAATTTGTGGTGCCAAAGTGACAAAATCTCGTTCGACTAGACCAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCACATGTCTCATATGATCTGAATGTCCTGGGCTCCAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATCCCAGCTTCAGCTGTTGAGCCAGGAGGTGTGGCCCCTACACAAACTCAATTCCTGCATAGCAGAATTGATGCTTCTCCATCTATTCCTTTCTTTAGATCAAAATCAACTCGCCTGGAAAATTTCCAATCAGCACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAACAAGTCCCCCAGGTGGCATGAGCAACTCCAATGTTGGTGTCTAAACTTCAATGGGCGAGTGACTGTGGCTTCTGTGAAAAATTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCGGAGCAGGCTCAGGAAAATGTTATTCTTCAGTTTGGGAAAGTGGAGAAAGATTTGTTCACGATGGATTATCAGTATCCAATCTCCGCTTTTGAAGCATTTGCGATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1338 0.4492 MACENVNGRWFSISNCRIESICHSVCMLVVVDFCLERETVSLSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDRWPARKHVVACAGVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLSLNQASIDDCKFLLAARKCRRPTHTDYIVSINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTRPVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDASPSIPFFRSKSTRLENFQSAPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVILQFGKVEKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0370 445 SUPERFAMILY Tubby C-terminal domain-like 142 445 IPR025659 -
Lele15g0370 445 SUPERFAMILY F-box domain 85 136 IPR036047 GO:0005515
Lele15g0370 445 ProSitePatterns Tub family signature 2. 430 445 IPR018066 -
Lele15g0370 445 PANTHER TUBBY-RELATED 73 443 - -
Lele15g0370 445 Gene3D Tubby Protein; Chain A 150 445 IPR025659 -
Lele15g0370 445 Pfam F-box domain 93 139 IPR001810 GO:0005515
Lele15g0370 445 FunFam Tubby-like F-box protein 150 445 - -
Lele15g0370 445 Pfam Tub family 154 440 IPR000007 -
Lele15g0370 445 PRINTS Tubby superfamily signature 224 248 IPR000007 -
Lele15g0370 445 PRINTS Tubby superfamily signature 273 300 IPR000007 -
Lele15g0370 445 PRINTS Tubby superfamily signature 357 374 IPR000007 -
Lele15g0370 445 PRINTS Tubby superfamily signature 375 391 IPR000007 -
Lele15g0370 445 PRINTS Tubby superfamily signature 423 445 IPR000007 -
Lele15g0370 445 PRINTS Tubby superfamily signature 208 224 IPR000007 -
Lele15g0370 445 PRINTS Tubby superfamily signature 402 421 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0370 Lele-ChrLele15 2119231 2123044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0370 43 445 TUB Transcription Factor Family AT2G47900 74.877 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele15g0370 Tub 1.6e-106 CL0395