Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0355 ATGGCTCAAGCTCAAGACCTTCCCTCAACAATGCCTCCAGTGATCATCAAAACCAGCTTCAATCCACCAAGAAGAAGCGAAATCTCCCGGGAACTCCAGGCAATTTCAACTCTACACCGATCCTCAACATTCGCCATATATAGCTTCTTTTCATATTCCTTTTCTAACTCCATGATATTACGTACTGATGGATTAGATCCGAATGCTGAAGTGATTGCTTTGTCACCAACAACATTGATGGCAAAGAACAGATTCGTGTGTGAGATATGCAACAAAGGTTTTCAGAGGGACCAGAACCTGCAGTTGCACCGGAGAGGTCACAATCTGCCATGGAAACTGAGACAGAGAGCGAGCAATGAGGTGAGCAAGAAACGAGTTTACGTGTGCCCAGAGCCTTCATGCGTCCACCATAGCCCAGCTCGAGCACTCGGAGACCTCACTGGCATCAAAAAGCACTTCAGCCGCAAGCACGGCGAGAAGAAATGGAAATGCGACAAATGCTCCAAAAAATACGCCGTCCAATCTGATTGGAAAGCCCACCAGAAAACCTGCGGTACCCGCGAATACAAATGCGATTGTGGCACCATGTTTTCCAGGAGAGAGAGTTTTATCACTCACAGAGCATTTTGTGATGCATTGGCTGAAGAAAACAACAGGGTGAATTCTGCAGTATCTCTCCACACTCATTCCAACATAGAATATGAATTGAACACAATGGTTCCTCAAGAAATTCTTGCAGTGCCATTCAAGTCGACGAGCACGAGCATGTGGGGAGGCATGTTCACAACCACTTCAAAAGGGTTGCCTCCTCTTCCTCTGCATAGCTCCCCTGTTTTCAATGCCGTCGTCCAAGATGGCCTGAATATTTCAGAGTCAGCTCACGCGTCTGCAACGGCTTTACTACAGAAAGCAGCTCAAATGGGGGCCACCGCAAGCAATGATGGCGATAACTCTGGCATGGTTCAAAAAGGGTATGTTACTTCCATGGCAGGTTCTGATTACCAGCCTGAACCCAACTCTGCTGGGACTAGTGGAGGCGGAGAATTCAGCAACCTATTGTTTCAAAAAGGTCCTCAAGAAATGTCGCAATCGTTTGGCTCTTACAATGATAAGGAAATGTTGAGCCAAATGGTGATGGGACCAAGAGATGGAGCGGGAAGTGAAATGACCAGAGTTCATGACTTCTTGGGAGTTGGGGTACTCAATCCTATGCCGAATTTGCAGGAGTTCCACGATAGCATTGGCTATAACGGAGATTGGAGTTGA 1266 0.47 MAQAQDLPSTMPPVIIKTSFNPPRRSEISRELQAISTLHRSSTFAIYSFFSYSFSNSMILRTDGLDPNAEVIALSPTTLMAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVSKKRVYVCPEPSCVHHSPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTMFSRRESFITHRAFCDALAEENNRVNSAVSLHTHSNIEYELNTMVPQEILAVPFKSTSTSMWGGMFTTTSKGLPPLPLHSSPVFNAVVQDGLNISESAHASATALLQKAAQMGATASNDGDNSGMVQKGYVTSMAGSDYQPEPNSAGTSGGGEFSNLLFQKGPQEMSQSFGSYNDKEMLSQMVMGPRDGAGSEMTRVHDFLGVGVLNPMPNLQEFHDSIGYNGDWS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0355 421 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 66 402 IPR031140 -
Lele15g0355 421 SMART c2h2final6 162 182 IPR013087 -
Lele15g0355 421 SMART c2h2final6 85 107 IPR013087 -
Lele15g0355 421 SMART c2h2final6 127 157 IPR013087 -
Lele15g0355 421 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Lele15g0355 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lele15g0355 421 MobiDBLite consensus disorder prediction 329 352 - -
Lele15g0355 421 Gene3D Classic Zinc Finger 65 132 - -
Lele15g0355 421 SUPERFAMILY beta-beta-alpha zinc fingers 84 183 IPR036236 -
Lele15g0355 421 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Lele15g0355 421 FunFam protein indeterminate-domain 12-like 64 133 - -
Lele15g0355 421 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lele15g0355 421 Gene3D Classic Zinc Finger 140 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0355 Lele-ChrLele15 2028189 2029552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0355 66 219 IDZ Gene Family AT3G50700 86.364 2.02e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g0355 zf-C2H2 0.0041 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1217 05 7638372 7640164 Lele15g0355 15 2028189 2029552 CCT
Lele15g0355 15 2028189 2029552 Lele05g1097 05 6829513 6832109 CCT
Lele15g0355 15 2028189 2029552 Lele06g0963 06 5941611 5944763 CCT
Lele15g0355 15 2028189 2029552 Lele07g1138 07 6866777 6869424 CCT
Lele15g0355 15 2028189 2029552 Lele08g0949 08 5988807 5991839 CCT
Lele13g2051 13 27640019 27653630 Lele15g0355 15 2028189 2029552 hybridization