Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0343 ATGAAGTTCTGCAAGAAATACGAGGAGTACATGCAAGGCCAGCAGAAGAAACTTCCTGGAGTTGGTATCAAGAAGCTCAAGAAGATATTGAAAAAATGCAGCAGAGACTGCCGATCGCGCAAAGGTCCCAATGAAGCCATTGGCGTCCGAACCTGCAGCGACCAATGCCCAGTGTGTGATGGAAGCTTTTTCCCTTACCTTCTCAACGGGATGACTGAAGTAGTAGGTTGCTTTAATGAGCGTGCCCAGCAAATGTTGAAGCTACATCTTGCTTCTGGCTTCAGAAAGTACTTTTTCTGGTTCAGAGGCAAATTACCTGGAAAACAAACTGCCCTCGTTCATGAAGGCAAAGACCTGGTTATTTATGCTCTAATTAATGCCATTGCAATTCGAAAGATACTCAAGAAATATGATAAGATTCATTATTCAAAGCAAGGACAATTATTTAAGTCACGAGCCCAGAGTATGCACATGGAAATTCTTCAGAGTCCCTGGCTTTGTGAGCTCATGGCCTTCCACATCAATTTAAGGGAAAGCAAGAACAAATCAATGAAGAAGCCACCTGCTTTCTTTGATGGATGTTCCCTCACATTTAAGGATGATAAACCATCACTTTCTTGTGAGCCATTTGATTCCATCAAACTTGATATTGACTTGACTTGTTCTATATGCTTAGACACGGTATTTGATCCAGTTAGTCTTACTTGTGGCCACATATTCTGCTACATGTGTGCTTGCTCATCTGCAGCAGTAACTATTTTTGACGGACTTAAGGCAGCAAGTTCCAATGCAAAATGTCCTCTATGCCGAATGGGAGGAGTCCATCAAGGCGCCGTGCGCTTGGAAGAAGTAAATATTTTGTTAGTCCGAAGCTGCAAGGGATACTGGGAACAAAGGCTTCAGACAGAGAGGGTTGAGAGGGTTAAGCAAATAAAAGAGCATTGGGAATCGCAGTGTAGGGCATTCATGGGTGTCTAA 978 0.4305 MKFCKKYEEYMQGQQKKLPGVGIKKLKKILKKCSRDCRSRKGPNEAIGVRTCSDQCPVCDGSFFPYLLNGMTEVVGCFNERAQQMLKLHLASGFRKYFFWFRGKLPGKQTALVHEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSRAQSMHMEILQSPWLCELMAFHINLRESKNKSMKKPPAFFDGCSLTFKDDKPSLSCEPFDSIKLDIDLTCSICLDTVFDPVSLTCGHIFCYMCACSSAAVTIFDGLKAASSNAKCPLCRMGGVHQGAVRLEEVNILLVRSCKGYWEQRLQTERVERVKQIKEHWESQCRAFMGV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0343 325 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Lele15g0343 325 SMART ring_2 221 269 IPR001841 -
Lele15g0343 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Lele15g0343 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Lele15g0343 325 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Lele15g0343 325 Pfam Zinc finger, C3HC4 type (RING finger) 221 269 IPR018957 GO:0046872
Lele15g0343 325 SUPERFAMILY RING/U-box 214 271 - -
Lele15g0343 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 323 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0343 Lele-ChrLele15 1954208 1957148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0343 218 270 C3H Transcription Factor Family AT4G28270 37.931 3.27e-06 45.4