Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0320 ATGTGTGGAGGTGCCATCATCTCTGACTTCATTCCTCGCCCCCGTGGTCGCCGCCTTACCCCCTCCGACATCTGGCCTGACACACTCGGAAGCCACAGTCACTTCCACTCGGAGTTTTCTCACCCCGTTCCCCTCCAAAACCCTCAACTTTCCACAGTAGCCGAGCAGGTTGAGAAGCCCGCCAAGAGGCAGAGGAAGAACCTTTACAGAGGGATTCGGCACCGTCCGTGGGGTAAATGGGCTGCGGAGATTCATGATCCTAGGAAAGGGGTTCGTGTTTGGCTCGGCACTTACAACACTGCGGAAGAAGCTGCCAGGGCCTATGACCGAGAAGCTCGTCAAATCCGCGGCAAGAAAGCCAAGGTCAATTTTCCCAACGAAGACGATGATCGCTCCATTCAAGCACGTCGCAACCCACCGCCTCAACGCTCCGACGGTGCCCCGAGAAGTCCGAATCTGGAGTTCGGTTATGATCTGAACCAAACCGGGGCAACTTGTTCTTCCCGTGGGGGAGTGTCAGGTTCAGAGGGTGGTTACTCGACGATGGAGTTGTTGGGGTCGAATCAGAGAAAGGGGGGCGAGGGAGGTAAGACGAAGAAGGTGGGCATAGAAGGGGAGGAAGAAGAGAACCAAGTAGGGGAGCTATCGGTGGAGCTGATGGCGTATGAGAATGATTACATGAAGTTTTATCAGATTCCATACTACGACGGCCCATCGGCGACACGAAATGGCGCTCAGGAGAACGTGGTGGGTGACCTGTGGAGCTTCGACGATGAAGGCATTCAGGCATGCCATTTGCAGCAGATACCCGGCGAGAGGAAGATGGTGTCGCTCAAGTTGCAGAAGCGGCTCGCCTCTAGTGTCTTAAAGTGCGGCAGAGGCAAGGTTTGGCTGGATCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTAGTGAAGGATGGATTCATTATCAGGAAGCCGACTAAAATTCACTCTCGATCTCGTGCTCGGCGTATGAAGGAGGCCAAGAGAAAAGGACGTCATTCTGGATATGGTAAGCGTAAGGGTACGAGGGAGGCAAGGCTTCCCACTAAAATCCTCTGGATGAGGAGGATGCGTGTGCTCAGACGCCTGCTTCGCAAGTACAGGGAATCCAAAAAGATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTTCTGATGGAGAGCATACACAAGTCTAAGGCTGAGAAAGCAAGAGAGAAAACGTTGTCTGACCAATTTGAAGCTAAGCGTGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCCCGGAGAGAGGAGCGCTTGGCTCAGGGTCCTGGAGAAAAGGCACCAGTAGCGCCACCTGCTGCTTCCCAGCCTGTCCAGGTATCAAAGAAATCCAAGAAGTAA 1449 0.5238 MCGGAIISDFIPRPRGRRLTPSDIWPDTLGSHSHFHSEFSHPVPLQNPQLSTVAEQVEKPAKRQRKNLYRGIRHRPWGKWAAEIHDPRKGVRVWLGTYNTAEEAARAYDREARQIRGKKAKVNFPNEDDDRSIQARRNPPPQRSDGAPRSPNLEFGYDLNQTGATCSSRGGVSGSEGGYSTMELLGSNQRKGGEGGKTKKVGIEGEEEENQVGELSVELMAYENDYMKFYQIPYYDGPSATRNGAQENVVGDLWSFDDEGIQACHLQQIPGERKMVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKAPVAPPAASQPVQVSKKSKK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0320 482 CDD Ribosomal_L19e_E 278 441 IPR033935 GO:0003735|GO:0022625
Lele15g0320 482 Coils Coil 98 118 - -
Lele15g0320 482 SMART Ribosomal_L19e_2 277 420 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele15g0320 482 Hamap 50S ribosomal protein L19e [rpl19e]. 277 423 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele15g0320 482 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Lele15g0320 482 Coils Coil 205 225 - -
Lele15g0320 482 FunFam Ribosomal protein L19 331 466 - -
Lele15g0320 482 Pfam AP2 domain 69 117 IPR001471 GO:0003700|GO:0006355
Lele15g0320 482 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Lele15g0320 482 FunFam Ribosomal protein L19 275 330 - -
Lele15g0320 482 CDD AP2 69 126 IPR001471 GO:0003700|GO:0006355
Lele15g0320 482 MobiDBLite consensus disorder prediction 331 353 - -
Lele15g0320 482 MobiDBLite consensus disorder prediction 117 136 - -
Lele15g0320 482 MobiDBLite consensus disorder prediction 117 200 - -
Lele15g0320 482 MobiDBLite consensus disorder prediction 423 482 - -
Lele15g0320 482 Pfam Ribosomal protein L19e 278 419 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele15g0320 482 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
Lele15g0320 482 ProSitePatterns Ribosomal protein L19e signature. 281 300 IPR023638 -
Lele15g0320 482 PANTHER 60S RIBOSOMAL PROTEIN L19 275 462 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lele15g0320 482 MobiDBLite consensus disorder prediction 331 359 - -
Lele15g0320 482 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Lele15g0320 482 MobiDBLite consensus disorder prediction 155 187 - -
Lele15g0320 482 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Lele15g0320 482 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Lele15g0320 482 SUPERFAMILY Ribosomal protein L19 (L19e) 277 418 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lele15g0320 482 Gene3D - 276 330 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lele15g0320 482 Gene3D - 331 462 - -
Lele15g0320 482 MobiDBLite consensus disorder prediction 423 458 - -
Lele15g0320 482 SUPERFAMILY DNA-binding domain 68 126 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0320 Lele-ChrLele15 1806615 1810507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0320 275 482 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.615 6.61e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele15g0320 Ribosomal_L19e 2.4e-63 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2017 14 26187906 26188813 Lele15g0320 15 1806615 1810507 hybridization