Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0306 ATGGGAAGAGCACCGTGCTGTGAGAAAGTCGGCTTGAAAAAGGGAAGATGGAGCGCTCAAGAGGATGAAATCTTGATCAAGTACATTCAGGCCAATGGGGAAGGCTCCTGGAGGGCTTTGCCCAAGAATGCTGGGCTTCTGAGGTGTGGCAAGAGTTGCAGGTTAAGATGGATCAACTACTTGAGATCTGACCTTAAGAGGGGCAACATTTCTGCTCACGAGGAACAGCTCATTATTAAACTTCATTCTTCTCTGGGCAACAGGTGGTCCCATATAGCGAGTCACTTGCCAGGAAGAACAGACAACGAAATTAAAAACTACTGGAATTCTCACTTGAGCAGGAAAATCTACGCCCTCAGGAGGCCGGCTAGTACGGATCAGGCCGACCAAGCAGCGACGACCATGGATTCAACCACAGCCAATAATAATAAAGCAAGCAATATTACAGCAACCAGGCGCAAGCGTGGCAGAACCAGCCGTAGGGCCATGAAGAAGAACAGAAGCAACAACACCCTGCAAGAGTCTACGGCGGGGGAGAAGACGACTCACAAAAGTACTGTAGCAGCAGTTCCGGTGCCACCCACGCCGGCGCTAGAGAACGAAGGCTTGTCCATCACAAGTGACGATGGCATAGACTTTGGGGACTTCATGGTCCTGGAAGGTGACGACAATAGAGAAGACAAATCAGAGAGATCAGGAGAAGCGGGTGAGGCAAGTAATAACAATGGAGAAAGAGACGGAGATGGTTCGTTGAGGCCAGGTGGAGACAGAGAAACAGAGACGACACAGGAGGATCATGAGCAAGGCATTGATGGTGGTGGGGAGTTATGTCTGAGTGACATGGTGGACACTTGGTTGCTGGAAGACGAAGGAGGTGGGGTTTCCAGTTTAACTGAAGAGAGAGAGAGAACTGATGAGGTGTCTTGTTTTGATAAGCCAGAGTGTACTAATAATACTACTCAAGACTCCATTCCTTCCCTATTTGAAGGCGATAATTACTGGGATAACTGGGAGATTAGTGTGGACGACGACCAGTGGATGAATCATAACGAGTCGCAGACATGGTGGGAGGACAAACAAAACCTCTTGTCTTGGCTCTAG 1101 0.4905 MGRAPCCEKVGLKKGRWSAQEDEILIKYIQANGEGSWRALPKNAGLLRCGKSCRLRWINYLRSDLKRGNISAHEEQLIIKLHSSLGNRWSHIASHLPGRTDNEIKNYWNSHLSRKIYALRRPASTDQADQAATTMDSTTANNNKASNITATRRKRGRTSRRAMKKNRSNNTLQESTAGEKTTHKSTVAAVPVPPTPALENEGLSITSDDGIDFGDFMVLEGDDNREDKSERSGEAGEASNNNGERDGDGSLRPGGDRETETTQEDHEQGIDGGGELCLSDMVDTWLLEDEGGGVSSLTEERERTDEVSCFDKPECTNNTTQDSIPSLFEGDNYWDNWEISVDDDQWMNHNESQTWWEDKQNLLSWL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0306 366 FunFam Myb transcription factor 11 67 - -
Lele15g0306 366 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele15g0306 366 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele15g0306 366 MobiDBLite consensus disorder prediction 249 271 - -
Lele15g0306 366 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 219 - -
Lele15g0306 366 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele15g0306 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele15g0306 366 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele15g0306 366 MobiDBLite consensus disorder prediction 123 275 - -
Lele15g0306 366 CDD SANT 71 112 IPR001005 -
Lele15g0306 366 MobiDBLite consensus disorder prediction 126 149 - -
Lele15g0306 366 Gene3D - 13 66 - -
Lele15g0306 366 MobiDBLite consensus disorder prediction 218 234 - -
Lele15g0306 366 SMART sant 66 114 IPR001005 -
Lele15g0306 366 SMART sant 13 63 IPR001005 -
Lele15g0306 366 MobiDBLite consensus disorder prediction 150 164 - -
Lele15g0306 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele15g0306 366 CDD SANT 16 61 IPR001005 -
Lele15g0306 366 Gene3D - 71 116 - -
Lele15g0306 366 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele15g0306 366 MobiDBLite consensus disorder prediction 165 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0306 Lele-ChrLele15 1725505 1727509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0306 1 164 MYB Transcription Factor Family AT2G47460 68.902 7.73e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele15g0306 Myb_DNA-binding 1.8e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2106 13 27936143 27938247 Lele15g0306 15 1725505 1727509 hybridization
Lele14g2032 14 26275322 26277253 Lele15g0306 15 1725505 1727509 hybridization