Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0299 ATGGCCGTCGCTACTACCTCCTCTCTCAATGCTTCAGAAAAGAAGTACTGGTGGCTCACCAACCGAAAGATTGTTGAGAAATACATCAAAGACGCTCGCGGCCTCATCGCCACCCAAGAGCAGAGCGAGATCGCATCGGCTCTGAACCTTGTAGACGCGGCACTGGCCATATCCCCACGCCTAGACCAGGCGCTCGAGCTCAGAGCCAGGTCTCTTCTTTATCTCCGGCGTTTTAAGGACGTCGCCGATATGCTTCAGGACTACATTCCCAGCCTCAAGATGGCGGTCGAGGATTCGGGCTCTTGTTCTTCGGATAGTTCGTCTCAGCAGCTCTCGAGGGAGGGAGTGAAGCTGCTCTCGTCTTCGGAATCGTCGTCACCGGATCAGAGTTTCAAGTGCTTCTCCGTCTCGGACTTGAAGAAGAAAGTGATGGCAGGGCTGTGTAAAAGTGGCGAGAAGGGAGGGCAATGGAGATACTTGGTGCTGGGTCAAGCATGTTGCCATCTCGGTCTGATGGAGGATGCGCTGGTTCTTCTCCAAACCGGGAAACGACTTGCCAGCGCCGCCTTCCGCCGCGAGAGCGTTTGCTGGTCCGACGACAGCTTCTCTTTAAACATTCCCTTCTCCGGTGACGCGACCAACCCCCCTCCCACCACTCCACCTCGAACACCTCTTACTGAATTTGAGAGCGTCACCCAACTCCTCAGCCACATCAAGCTCCTCCGCCGCCGCCGCACTGCGGCGCTCGCCGCCCTTGACGCCGGTCTCTATTCTGAGGCCATTCGCCACTTCTCCAAAATCATCGACGGCCGCCGTGGCGCTCCGCAAGCCTTTCTCGCCGAATGCTATATGCAGAGAGCCTCTGCCTACCGTTCCGCAGGCCGAATCGCAGACTCCATTGCGGATTGTAATCGCACACTGGCTTTGGACCCCAGTTGCATTCAAGCTCTTGATACCAGAGCTGCCCTTCTAGAGTCCATTCGATGCTTGCCCGATTGCCTACACGATCTTGAACACTTGAAGCTTTTGTACAATACAATCTTGCGGGACCGTAAGCTTCCAGGTCCTGCTTGGAAGCGTCATAATGTAAGGTACAGAGAGATTCCTGGGAAACTCTGCGCTCTCACGACGAAAATTCAAGAACTGAAGCAAAGGGTGGCTTCAAGGGAAACTGGTAATGTGGATTACTACGCTTTGATTGGATTGCGACGTGGTTGCTCTCGATCGGAGTTGGAGAGGGCTCATTTGTTGCTCTGTTTACGGCACAAACCGGATAAAGCTACCAGCTTCATTGATCGCTGCGAGCTTGCGGACGAACGAGATCTTGAATCGGTGAAGGAGAGGTCAAAAATGTCAGCATTGTTATTGTACAGATTGATTCAGAAGGGTTACACGAGTGTGATGGCTACGATCATGGATGAAGAAGCCGCCGAGAAGCAGAGGAAGAAGGCGGCGGCTGCCTTGCAAGCTGCACAAGCAGCAATTCAGGTGCCGGAAAAAAGTAGGTGCAGAACGGACTATGAGGGGAAGAAATCAGAGAAAACAGTATCTTCATCGACTGTAAACCCTTCTGTATTCCAGGGGGTGTTTTGCCGTGATCTTGCCGTCGTCGGGAGCCTGCTTTCTCAAGCGGGATTCAACCGTTCTATTCCAATGAAATATGAGGCATTGAGCTGCTGA 1680 0.5321 MAVATTSSLNASEKKYWWLTNRKIVEKYIKDARGLIATQEQSEIASALNLVDAALAISPRLDQALELRARSLLYLRRFKDVADMLQDYIPSLKMAVEDSGSCSSDSSSQQLSREGVKLLSSSESSSPDQSFKCFSVSDLKKKVMAGLCKSGEKGGQWRYLVLGQACCHLGLMEDALVLLQTGKRLASAAFRRESVCWSDDSFSLNIPFSGDATNPPPTTPPRTPLTEFESVTQLLSHIKLLRRRRTAALAALDAGLYSEAIRHFSKIIDGRRGAPQAFLAECYMQRASAYRSAGRIADSIADCNRTLALDPSCIQALDTRAALLESIRCLPDCLHDLEHLKLLYNTILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASRETGNVDYYALIGLRRGCSRSELERAHLLLCLRHKPDKATSFIDRCELADERDLESVKERSKMSALLLYRLIQKGYTSVMATIMDEEAAEKQRKKAAAALQAAQAAIQVPEKSRCRTDYEGKKSEKTVSSSTVNPSVFQGVFCRDLAVVGSLLSQAGFNRSIPMKYEALSC 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0299 559 SMART tpr_5 280 313 IPR019734 GO:0005515
Lele15g0299 559 CDD DnaJ 395 429 IPR001623 -
Lele15g0299 559 SUPERFAMILY TPR-like 247 341 IPR011990 GO:0005515
Lele15g0299 559 Coils Coil 474 494 - -
Lele15g0299 559 PANTHER OS01G0273500 PROTEIN 6 559 - -
Lele15g0299 559 Gene3D DnaJ domain 380 527 IPR036869 -
Lele15g0299 559 SUPERFAMILY Chaperone J-domain 389 429 IPR036869 -
Lele15g0299 559 Gene3D Tetratricopeptide repeat domain 225 353 IPR011990 GO:0005515
Lele15g0299 559 SMART dnaj_3 394 476 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0299 Lele-ChrLele15 1700081 1702415 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0172 06 1051817 1054534 Lele15g0299 15 1700081 1702415 CCT
Lele07g0372 07 2110581 2115131 Lele15g0299 15 1700081 1702415 CCT
Lele08g0177 08 1094628 1097350 Lele15g0299 15 1700081 1702415 CCT
Lele05g0353 05 2026728 2029975 Lele15g0299 15 1700081 1702415 CCT
Lele13g2110 13 27958966 27963017 Lele15g0299 15 1700081 1702415 hybridization
Lele14g2037 14 26308116 26310461 Lele15g0299 15 1700081 1702415 hybridization