Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0296 ATGGGAGAGGTTGTTGTGTTTATTGACGATTTGAAATCTATTTCTGGGATTTCTCGATGTAGAATATGTCATGAGGAAGAATTTGAGAGCTCAAAAAGCTTTGAAGCTCCCTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAATGAGAAGGGGGATACAATTTGTGAAATATGTCTCCAGCAATATGAACCTGGTTACACGGCTCCTCCTCCAAAGAAATTGCAGATAAATGACGAAGCAATGACCATTCGAGATAGCCTGCAATTTTCAAGAATGGAGGAAGAAGCGTTGAATGCAAGATTGGAATCAATAGTTGAAAGAGTGGCAATAGAAAGTGATTTCTCTGAATGCACGTCTGCCGCAGATAGAAGTGCATCTTACTGCCGATTCCTGGCCTTGGCATTTACACTCTTTATGCTTGTGAGACATCTTCTCGCTGTGCTCACGAGTGGAGCAGAAGATTACCCATTTACACTTCTGACTGTTTTAATGCTAAGGGCTGGTGGAATTGTGCTACCCATGTTCATAATTATTAGACTGATTGGAGCGCTTCAAAACATAATTCAACGTCACTATCAGGATTCTGAAGATGGCGCAGCAATATCTGATGGATATGACAACGAAACCGGGCCACTGCGTGATGTGATTTTTAGACACACATAA 690 0.4203 MGEVVVFIDDLKSISGISRCRICHEEEFESSKSFEAPCACSGTVKFAHRDCIQRWCNEKGDTICEICLQQYEPGYTAPPPKKLQINDEAMTIRDSLQFSRMEEEALNARLESIVERVAIESDFSECTSAADRSASYCRFLALAFTLFMLVRHLLAVLTSGAEDYPFTLLTVLMLRAGGIVLPMFIIIRLIGALQNIIQRHYQDSEDGAAISDGYDNETGPLRDVIFRHT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0296 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Lele15g0296 229 SUPERFAMILY RING/U-box 19 72 - -
Lele15g0296 229 SMART ringv_2 19 68 IPR011016 GO:0008270
Lele15g0296 229 Pfam Protein of unknown function (DUF3675) 73 190 IPR022143 -
Lele15g0296 229 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Lele15g0296 229 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Lele15g0296 229 CDD RING_CH-C4HC3_MARCH 20 67 - -
Lele15g0296 229 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Lele15g0296 229 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 200 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0296 Lele-ChrLele15 1680996 1683055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0296 20 67 C3H Transcription Factor Family AT2G37950 42.857 2.28e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0347 05 1984574 1990111 Lele15g0296 15 1680996 1683055 CCT
Lele13g2115 13 27979470 27982447 Lele15g0296 15 1680996 1683055 hybridization
Lele14g2041 14 26329234 26331621 Lele15g0296 15 1680996 1683055 hybridization