Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0275 ATGGGCACAAGCTATTTAGTGGGAGTAGAGGAATCATCCGGAAGCCTCTTTTTTCAATTTCAATTTCAATGGCCGGTTCATCGTAATCCTATTAGAGCAAGGCTCAATCCAATGGTCTGTCCTCGCTCAATCCTGGGCACATTAACAATGAACCCTGTGAAATATATGTCAAGTCACATACAAATAGTTAGCCTTATGGACAAGGTTACAAAGCTGGAGAATCTCAATAACCACCCGGATCAAAGAGTCCCCGGAAACGGCCTCCCCCCTCCCCCTCCCGGTCACCCAATGCACCCTCATATCCATGAACCGTTTTTCAGCCACTGCAACTTTCAACAGCCGAACGGCCACGATCCTCACATCCCCGGTAACTTCACTTACCCCCATGTCCCTGTCCCTCCCCCTGCCAATGGTTTTGCTAACCATACTCAACCTTATAACCACTTTAATCCCATGAATGGCGAGCCAAACAACTCGTTCAGTGCTGGAGGACCTCCCCCTACTAATGGCAACTCTGGATATGGTTTTAACCATTCCTTGCCGCGTCCGGGGCGAAAACGAGGTTGGCATCTCTCTACCCAAGGAACTCCTCCAGATCAAGTTGACGGTGCTTATAATGTGAAACTTTACATTGCTCCAGTTCCAAGAACGTCGACAGAAAATGATATTCGCCTTGTGTTTGAAGAACATGGAACTATTGTTGAGGTTGTTCTTTTGAGGGATAAGAAAACAGGCGAAAGGCAAGGAAGTTGTTTTGTGAAATTTGCAACGTTAGATGAAGCTGAGAGGGCTATCAAAGCCTTAAGCAATCAATATACTTTTCCTGGGGAGTCATCGCCCATTGTTGTCAGATTCGCGGACCGAGAAAAAGAGCGCCTTGGGATTCGAGGGTTCCCCCAAATCATGGATAAAAAAAATCCCTCAGAAGGGACTCGAGGGTTCTCCCAAATCATGGATAAAAAAAGTCCCTCAGAAGAGGTGGTGGACAAAGTGTTTGTTGGTCACATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAGTATTTTCTCCTTATGGACATGTGGAGGACATCTTCATTGCACAATCTCGCGGATACTGTTTTGTCAAATTTTCAAACAAAGATATGGCTTTGGCAGCAATTAAAGGGCTGAACAATGTATTCACAATGAGGGGCTGTGATCATCCATTAATTGTTCGTTTTGCGGAACCTAAGAAACCCAAGACTGGGGAACCCAGGGTCAACCATATGCCTTGGGGTGCATTTGGTCCATGCTCTCAAGAACCAGCAGTCTGGCTGCCACCGAACTTTGGTGATTCCATTGGAGGGAGTAATCTGCCTATGGCCCCGCATCATCCCACAATTCCACACCCACAAGTTGCTCCTCATATTCAAAACTGGGAACCTGCTAATACTATAGTGCAACAACCATTTCCTTCCAAGCAAGCACACCCACAATTGGCTCCAATGCCCTCCCAGTCCATGCAGGCTCAAAAGTTATCTTCTCAACCAGTTATTACGGAGATGCTGAAGCAGTCACATCCAACAGATTCATCAACTCAAAATATAGAGCAGCAGCTAAATTCACAGCCTTCCCAGGCCGGAGGCAGTCCTTGTGCTGTTGCTGGCAGTACATCACCAGATATGCCAGGAAGTTCTGATGACGAAAGTTTTCCAGATTGTGACTGGAGTGGACATATCTGTCCTGATGGTAATAAGTACTACTATAATTGCGTGACTTTTGAAAGTAGGTGGGAGAAGCCTGAGGAATATGCCTTGTATGAGAACAAACTACAAGAGGAGGATGATCATGGCTGTCCAAATTCATAG 1830 0.4579 MGTSYLVGVEESSGSLFFQFQFQWPVHRNPIRARLNPMVCPRSILGTLTMNPVKYMSSHIQIVSLMDKVTKLENLNNHPDQRVPGNGLPPPPPGHPMHPHIHEPFFSHCNFQQPNGHDPHIPGNFTYPHVPVPPPANGFANHTQPYNHFNPMNGEPNNSFSAGGPPPTNGNSGYGFNHSLPRPGRKRGWHLSTQGTPPDQVDGAYNVKLYIAPVPRTSTENDIRLVFEEHGTIVEVVLLRDKKTGERQGSCFVKFATLDEAERAIKALSNQYTFPGESSPIVVRFADREKERLGIRGFPQIMDKKNPSEGTRGFSQIMDKKSPSEEVVDKVFVGHINKEASKKEIEEVFSPYGHVEDIFIAQSRGYCFVKFSNKDMALAAIKGLNNVFTMRGCDHPLIVRFAEPKKPKTGEPRVNHMPWGAFGPCSQEPAVWLPPNFGDSIGGSNLPMAPHHPTIPHPQVAPHIQNWEPANTIVQQPFPSKQAHPQLAPMPSQSMQAQKLSSQPVITEMLKQSHPTDSSTQNIEQQLNSQPSQAGGSPCAVAGSTSPDMPGSSDDESFPDCDWSGHICPDGNKYYYNCVTFESRWEKPEEYALYENKLQEEDDHGCPNS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0275 609 SUPERFAMILY WW domain 562 594 IPR036020 GO:0005515
Lele15g0275 609 ProSiteProfiles WW/rsp5/WWP domain profile. 563 590 IPR001202 GO:0005515
Lele15g0275 609 MobiDBLite consensus disorder prediction 479 552 - -
Lele15g0275 609 Gene3D - 200 293 IPR012677 -
Lele15g0275 609 ProSitePatterns WW/rsp5/WWP domain signature. 563 588 IPR001202 GO:0005515
Lele15g0275 609 Gene3D - 559 602 - -
Lele15g0275 609 MobiDBLite consensus disorder prediction 140 176 - -
Lele15g0275 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 404 IPR000504 GO:0003723
Lele15g0275 609 SUPERFAMILY RNA-binding domain, RBD 190 296 IPR035979 GO:0003676
Lele15g0275 609 SUPERFAMILY RNA-binding domain, RBD 330 415 IPR035979 GO:0003676
Lele15g0275 609 SMART rrm1_1 330 400 IPR000504 GO:0003723
Lele15g0275 609 SMART rrm1_1 208 284 IPR000504 GO:0003723
Lele15g0275 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 288 IPR000504 GO:0003723
Lele15g0275 609 MobiDBLite consensus disorder prediction 138 188 - -
Lele15g0275 609 MobiDBLite consensus disorder prediction 479 558 - -
Lele15g0275 609 Gene3D - 316 410 IPR012677 -
Lele15g0275 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 391 IPR000504 GO:0003723
Lele15g0275 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Lele15g0275 609 CDD WW 561 590 IPR001202 GO:0005515
Lele15g0275 609 PANTHER RNA BINDING PROTEIN 141 592 - -
Lele15g0275 609 SMART ww_5 558 590 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0275 Lele-ChrLele15 1547893 1555807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0275 209 408 Eukaryotic Initiation Factors Gene Family AT1G71770 23.558 9.80e-10 59.7