LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g0262	ATGGTTGAGATGGTGAGGGGCAGTCTGATTCTTCCGTGCCTTAAGTCAAACGTTAATTCACTCTGCAAACTTGAAGTCCTTAGGCTGATCCTTACACGGGGTGTACCACATGCTCGGTTAACAGATGTAAATGCAAATACAAATGGCATTGATAGGTTGCCTGCCGAGATGAATGACATGAAAATTAATGACGACAAGGAAATGGAAGCAACTGTTATAGATGGAAACGGGAATGAGGCAGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCATGTTATTGGGCATGGATCTTTTGGAGTAGTTTTCCAGGCAAAATGCTTGGAGACGGGTGAAACTGTGGCTATAAAAAAGGTTCTTCAAGACAAGAGGTACAAGAATCGAGAACTGCAAACCATGCGTCTACTTGACCACCCTAACATAGTATCTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGAGGAGCTTTACCTGAACTTGTTATTAGAGTATGTTCCTGAGACTCTCCATCGGGTGATCAGACACTATAACAAAATGAATCAAAGGATGCCATTGATATATGTCAAACTTTATTTTTACCAGATATGTAGAGCACTTGCTTACATTCACAACAGTATCGGAGTGTGCCACAGGGACATAAAACCTCAAAATCTACTGGTTAATCATCACACACATCAACTGAAGCTATGTGACTTTGGAAGTGCAAAAGTGTTGGTAAAAGGGGAACCGAACATATCATATATCTGTTCTAGGTACTATAGAGCTCCTGAGCTCATCTTTGGTGCTACTGAGTACACCACAGCCATTGACATCTGGTCTGCTGGTTGCGTACTTGGTGAACTATTGCTTGGTCAGCCTCTCTTCCCTGGCGAGAGTGAAGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCGACAAGGGAAGAAATCAAGTGCATGAATCCTAATTACACCGAGTTCAAGTTCCCGCAAATTAAAGCCCATCCTTGGCACAAGATCTTTCACAAACGCATGCCATCTGATGCTGTGGATCTTGTCTCAAGACTACTGCAGTACTCTCCCAATCTTCGAAGCACAGCTTTGGAGGCTCTTGTTCACACGTTCTTTGATGAGCTGCGTGACCCAAACACTCGGTTGCCAAACGGGCGTTTCCTCCCCCCACTCTTCAACTTCAAGGCAAATGAGCTCAAGGGAGTGCCTGCTGAGATGCTGGTGAAGCTTATTCCACCACATGCAAGAAGGGAGTGTGCATTGTTCGGGGCATAA	1314	0.4368	MVEMVRGSLILPCLKSNVNSLCKLEVLRLILTRGVPHARLTDVNANTNGIDRLPAEMNDMKINDDKEMEATVIDGNGNEAGHIIVTTIGGKNGQPKQTISYMAEHVIGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNIVSLKHCFFSTTEKEELYLNLLLEYVPETLHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNSIGVCHRDIKPQNLLVNHHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESEVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPSDAVDLVSRLLQYSPNLRSTALEALVHTFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPAEMLVKLIPPHARRECALFGA	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g0262	437	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	65	430	-	-
	Lele15g0262	437	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	222	234	IPR008271	GO:0004672\|GO:0006468
	Lele15g0262	437	Pfam	Protein kinase domain	102	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g0262	437	ProSitePatterns	Protein kinases ATP-binding region signature.	107	131	IPR017441	GO:0005524
	Lele15g0262	437	CDD	STKc_GSK3	96	388	IPR039192	-
	Lele15g0262	437	Gene3D	Transferase(Phosphotransferase) domain 1	181	429	-	-
	Lele15g0262	437	FunFam	Shaggy-related protein kinase kappa	181	429	-	-
	Lele15g0262	437	FunFam	Glycogen synthase kinase-3 beta	85	180	-	-
	Lele15g0262	437	Gene3D	Phosphorylase Kinase; domain 1	85	180	-	-
	Lele15g0262	437	SMART	serkin_6	101	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g0262	437	SUPERFAMILY	Protein kinase-like (PK-like)	100	410	IPR011009	-
	Lele15g0262	437	ProSiteProfiles	Protein kinase domain profile.	101	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g0262	Lele-ChrLele15	1482549	1485484	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g0262	107	392	MAP Kinase Gene Family	AT3G45640	35.932	7.27e-56	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Lele15g0262		Pkinase	2.9e-64	CL0016