Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0261 ATGCGCGCAGCTTCTCGGTCTTACACTCCAGCAGGCTTTGATGGTGTACTTACTGAGGAAATAAAAAGATCAAGGTTCCGCTTGTTTGAACCTCCAAAAGCTGGTTGGATCCGTTTTGTTGGAGCTGGCTTGCAATGTTTTCCTAAAGGAGCAATTACATGTGAGATCGAAGATGCCGCTGCCACCGCGCCTCCGAGTTTTGACCGAGTTCGCGCTTCTCCATTAGCGTCTGCCGAGTTACTCAGTTCACAAGAAGATATTAAAGTTGCAGACGGAATATCAAATGCTGCTCTTGATTCTTTTGTTCTTCAATTTGTTCCCACCATTCGTTCTGGCAGTTTTGCTGACATTGGCCCCCGGAGATACATGGAAGATGAACATATAAGGATAGACGATCTGTCTTCTCACATGGGATCACTATATACTTTTCCTGAACCAAGTGCCTTCTATGGGGTATTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATATCCAGAAAAATGTAATGAGGTTCTTCTTTGAAGATGTTAGCTTCCCCAAGACATCTGAAGTTGATAATGTTTTTTTACAAGAGGCAGAGAGCTCCCTCAGAAAATCATTTCTTTTGGCTGACTCAGCTTTGGCTGATGATTGCAGTGTGAGCAACTCATCAGGGACCACGGCTCTTACTGCCTTGATATTTGGAAGGCTTCTTATGGTGGCCAATGCTGGTGACTGTCGAGCAGTTCTCTGTCGTAAAGGAGAGGCAATTGACATGTCCCAAGATCACAGGCCTATTTATCCTTCAGAGCGGAGGAGAGTTGAGGAATTGGGCGGTCATGTTGATGATGGTTATCTTAATGGGGTTTTGTCAGTTTCACGAGCCCTTGGGGACTGGGATATGAAGTTTCCTCGTGGTTCTCCCTCGCCTTTGATTGCCGAGCCCGAGTTTCTTCAAGTGGTTCTAACCGAGGATGATGAGTTCCTCATCATAGGCTGTGATGGAATTTGGGATGTCATGACAAGTCAGCAGGCAGTTAGCCTTGTTCGTAGAAGCCTGAGGCGGCATTATGACCCTGAGCGAAGTGCCAGGGACCTGGTCATGGAGGCACTACGCCTTAATACGTTTGATAATCTTACAGTGATTGTTGTGTGCTTCTCATCTAATTCTACTGATATCAGGGAGCCATCCCCTCCTCGTCAGAGGAAATTGAGGTGCTGCAGCCTTTCCGCGGAGGCGCTTTGTAGCTTGAGGAACTTGTTGGAAGGCAGTGCAAGCAACTGA 1266 0.4692 MRAASRSYTPAGFDGVLTEEIKRSRFRLFEPPKAGWIRFVGAGLQCFPKGAITCEIEDAAATAPPSFDRVRASPLASAELLSSQEDIKVADGISNAALDSFVLQFVPTIRSGSFADIGPRRYMEDEHIRIDDLSSHMGSLYTFPEPSAFYGVFDGHGGPEAAAYIQKNVMRFFFEDVSFPKTSEVDNVFLQEAESSLRKSFLLADSALADDCSVSNSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEELGGHVDDGYLNGVLSVSRALGDWDMKFPRGSPSPLIAEPEFLQVVLTEDDEFLIIGCDGIWDVMTSQQAVSLVRRSLRRHYDPERSARDLVMEALRLNTFDNLTVIVVCFSSNSTDIREPSPPRQRKLRCCSLSAEALCSLRNLLEGSASN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0261 421 CDD PP2Cc 109 380 IPR001932 -
Lele15g0261 421 ProSitePatterns PPM-type phosphatase domain signature. 149 157 IPR000222 GO:0043169
Lele15g0261 421 PANTHER PROTEIN PHOSPHATASE 2C 104 378 IPR015655 GO:0004722|GO:0006470
Lele15g0261 421 SUPERFAMILY PP2C-like 103 381 IPR036457 -
Lele15g0261 421 Gene3D - 104 387 IPR036457 -
Lele15g0261 421 ProSiteProfiles PPM-type phosphatase domain profile. 110 380 IPR001932 -
Lele15g0261 421 SMART PP2C_4 100 378 IPR001932 -
Lele15g0261 421 FunFam Probable protein phosphatase 2C 22 94 383 - -
Lele15g0261 421 Pfam Protein phosphatase 2C 120 372 IPR001932 -
Lele15g0261 421 SMART PP2C_SIG_2 125 380 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0261 Lele-ChrLele15 1475905 1479609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0261 123 417 PP2C-type Phosphatase Gene Family AT3G62260 69.932 7.21e-150 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lele15g0261 PP2C 5.8e-65 CL0238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2151 13 28215795 28221106 Lele15g0261 15 1475905 1479609 hybridization
Lele14g2083 14 26544650 26547126 Lele15g0261 15 1475905 1479609 hybridization