Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0259 ATGTTATCCAAAGGCCTTGCGTATGGGCTTGGGGCAATATTGAATCACGAACTCTTAACGTTTCATCATCTTCCGTGCCAGAGTAAATGCCCTTTCGATGAAAAGATCTTTGTGAAAACCCTTACAGGTAAGACGATAACCTTAGAGGTTGAGTCGTCAGACACAATCGATAATGTGAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAACAACGCCTCATCTTCGCTGGCAAGCAACTCGAGGATGGACGAACCCTTGCTGACTACAATATCCAGAAGGAGTCCACCCTCCACCTTGTTCTTCGCCTCCGTGGTGGTGCCAAGAAGCGTAAGAAGAAGACTTACACAAAGCCCAAGAAAATTAAGCACAAGAAGAAGAAGGTGAAGCTCGCTATCCTTCAGTTTTACAAAGTCGATGATTCTGGGAAGGTTCAGAGGCTGAGGAAGGAGTGCCCGAATTCTGAATGCGGAGCTGGCACCTTTATGGCCAATCACGCTGATAGGCACTATTGTGGTAAGTGCGGCCTCACCTATAGTGTCCGCGACATTATTTCTGTCAATCGTATTCAGGGAGGTGAATGGTTGGTAACTTGGGATAACCTTCGAAAGCCTCGTTCCCAACAGGGCATGGTCATGTGCCTACATGGCCAGCAAATAGTCCAGTTGGCACTTGGCACCATGATAGTGTTGAGTGTTGACGTGGCCCATTTTGACATGGGTCCACTTTTTTCTTTCCTAAGCGCATTGTTTACTCCGTCTCCCTCCACCACCGTGATCATCACTGATAGCGTAGAAGTAGATGAACCCAAGGTCCGATCCATGGGTACCGCCTGA 843 0.4804 MLSKGLAYGLGAILNHELLTFHHLPCQSKCPFDEKIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAILQFYKVDDSGKVQRLRKECPNSECGAGTFMANHADRHYCGKCGLTYSVRDIISVNRIQGGEWLVTWDNLRKPRSQQGMVMCLHGQQIVQLALGTMIVLSVDVAHFDMGPLFSFLSALFTPSPSTTVIITDSVEVDEPKVRSMGTA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0259 280 Pfam Ubiquitin family 36 107 IPR000626 GO:0005515
Lele15g0259 280 SUPERFAMILY Ubiquitin-like 35 110 IPR029071 -
Lele15g0259 280 SUPERFAMILY Zn-binding ribosomal proteins 133 184 IPR011332 GO:0006412
Lele15g0259 280 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Lele15g0259 280 FunFam Ubiquitin-40S ribosomal protein S27a 34 112 - -
Lele15g0259 280 Gene3D - 35 113 - -
Lele15g0259 280 PANTHER UBIQUITIN 35 122 - -
Lele15g0259 280 CDD Ubl_ubiquitin 35 109 - -
Lele15g0259 280 ProSitePatterns Ubiquitin domain signature. 60 85 IPR019954 -
Lele15g0259 280 SMART Ribosomal_S27_2 135 180 IPR002906 GO:0003735|GO:0005840|GO:0006412
Lele15g0259 280 Pfam Ribosomal protein S27a 135 180 IPR002906 GO:0003735|GO:0005840|GO:0006412
Lele15g0259 280 SMART ubq_7 34 105 IPR000626 GO:0005515
Lele15g0259 280 PRINTS Ubiquitin signature 44 64 IPR019956 -
Lele15g0259 280 PRINTS Ubiquitin signature 65 85 IPR019956 -
Lele15g0259 280 PRINTS Ubiquitin signature 86 107 IPR019956 -
Lele15g0259 280 Gene3D - 114 185 IPR038582 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0259 Lele-ChrLele15 1465872 1470278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0259 35 181 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 91.156 1.85e-82 243