Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0245 ATGCCTCTCCCCTTCTGCTGGGCTCTCACCTCTGCGCGTGAAATTTCTGATCTCCCCGAGAGGATAGTTTCTTTCAATATTAATGGCAGTGACGACAAGTCAACTACTACGGTTGCTGTAGGCCTTGGAGGAGGAGGAGAAATGGAGCTTCGTGGATCATTTTTGCGGTTTCACGTGTCCAGCTCGGCCTCATCCTATGCAAAATTCCAAACATGGAATGCCAAAAGTACAGACAACATAAAGCAGGGGCACGTGAACCCCGCTTATCGGAAAATTGAGGCGGTCCACTGGTCCCAGTTTAGTCCAACCCCATTTCTTTGAAGCATACTGAGTCAATGCGCCCAGGAATCCCAGGCAGCTTCTCCCATCTTGCTTCAACGTAGGTTACTGCACGGCAATGATTTTGTTGAGCTCGTTTGGCAAAATGGCCAAATTCTGGTGCAAGGAGGGTCATCGAGTAGAACCCTGAAGAGGCCGTCTTGCTCTGGTTATTCCATAAACCCCTCCCATGAAGCTTACGACGAAGATCACTGCATCGCAAAACGAGCAAGGTTAAACACTTTATTCTCGCTTTTGGACTCCTCCCATCAGAATCCCCGACAAATCCATGACCCATATTCCTATCCGTTTGATTTGAAATGCACCGAAAGGAATAGTTTTAGTGATAGGCCTGGGGATGAATTTTTCAATTTAAGAGCAGAAAGAGAATCTAATTCCAAGCCCACAGTGGGGAATGCTCAGTTATGCTCAACTTCCTTACAGACCCAGAAGCATGACTTGGGATCTGATCTAAGAGTTAAAAAGATCAATTTCTCCAACTTCCTGAGACCTGCATTGTTTTTCAAATCTACTTATCAGGGAAACAGTGCAAATCGGCGCCCAAACAGTGGCATTTCAGCTTCAGCTAGAGTGGAGGAGATCAAAGCAACTGATGGTGGTAGTAGCAAAGCTGCTAAACATTCCTTTGTGATTGACTGGGCGGCTAAGGGATCACATAGTCTCAACGGAGTTCATCCTGGCCAAACAGCTTTTACTTCTAATAAAGCAAACTCAACAACACCCTTTGATGGAAAAAAGGATCAGGAAACACTCCCTGATGAGCAATCCGAAGCTGTTGGATACGATAGGGCCCTCAAGAGTCAGGGATCACATGGTCAACATCATCATCAAACACACAGTAGAAAAGGAAAAACACCTGCTGAGTTTTCTAGTGCACCCTTGGTAGCATCTTCTTCTTTGTGCTCGCTTGGAGCCTCGAATGACCCTACTCTTCGTAGTAGGAAACACGAGGACACTGACGACTCAACCTATACAAGTGATGATGATGAAGAAACAGAAGATACGACGACAAAGGAAACGCCGGCTCAAGATGGTTCAAGAGGCAAGAGAATCAGGAACACCCATATGCATAATTTATCGGAGAGGAAGAGACGAGATAAGATTAACAAGAAGATGCGTGCATTAAAACAGCTAATACCTAATTGCAACAAGATGGACAAGGCTTCAATGCTGGACGATGCCATCGATTATCTGAAGACCCTCAAGCTTCAGTTGCAGGTATTGTCAATGGGAAGTGGGTTTTGTATGCCTCTAATGATGTCGCAGTTAGGCTTAGGCATGCCTTGCGGGCTTCCTCCTCCTCAGTTTCAAATGGTTCCTCCTGGTTTCCCCAATCACGTGCTTCCCAATATTCAATTCCCAATGTCCCAACAATCTCCTTTCATTTCCATGCCTCCCAAGCCTATCCAACCCTACCTCTCTTCCCACCAGCTTCTTTCTGCAGCTGTGCCTATGCCCGAAGTTACTCAGGGGTTAAAGTGA 1821 0.4613 MPLPFCWALTSAREISDLPERIVSFNINGSDDKSTTTVAVGLGGGGEMELRGSFLRFHVSSSASSYAKFQTWNAKSTDNIKQGHVNPAYRKIEAVHWSQFSPTPFLXSILSQCAQESQAASPILLQRRLLHGNDFVELVWQNGQILVQGGSSSRTLKRPSCSGYSINPSHEAYDEDHCIAKRARLNTLFSLLDSSHQNPRQIHDPYSYPFDLKCTERNSFSDRPGDEFFNLRAERESNSKPTVGNAQLCSTSLQTQKHDLGSDLRVKKINFSNFLRPALFFKSTYQGNSANRRPNSGISASARVEEIKATDGGSSKAAKHSFVIDWAAKGSHSLNGVHPGQTAFTSNKANSTTPFDGKKDQETLPDEQSEAVGYDRALKSQGSHGQHHHQTHSRKGKTPAEFSSAPLVASSSLCSLGASNDPTLRSRKHEDTDDSTYTSDDDEETEDTTTKETPAQDGSRGKRIRNTHMHNLSERKRRDKINKKMRALKQLIPNCNKMDKASMLDDAIDYLKTLKLQLQVLSMGSGFCMPLMMSQLGLGMPCGLPPPQFQMVPPGFPNHVLPNIQFPMSQQSPFISMPPKPIQPYLSSHQLLSAAVPMPEVTQGLK 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0245 606 MobiDBLite consensus disorder prediction 449 478 - -
Lele15g0245 606 Pfam Helix-loop-helix DNA-binding domain 469 514 IPR011598 GO:0046983
Lele15g0245 606 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 525 IPR036638 GO:0046983
Lele15g0245 606 Gene3D - 461 522 IPR036638 GO:0046983
Lele15g0245 606 CDD bHLH_AtPIF_like 465 527 - -
Lele15g0245 606 MobiDBLite consensus disorder prediction 335 358 - -
Lele15g0245 606 MobiDBLite consensus disorder prediction 334 479 - -
Lele15g0245 606 MobiDBLite consensus disorder prediction 404 422 - -
Lele15g0245 606 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Lele15g0245 606 PANTHER TRANSCRIPTION FACTOR PIF3 122 583 IPR044273 GO:0003700|GO:0006355
Lele15g0245 606 SMART finulus 471 520 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0245 Lele-ChrLele15 1375428 1380462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0245 417 539 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 50.794 2.67e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele15g0245 HLH 1.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2165 13 28296250 28309798 Lele15g0245 15 1375428 1380462 hybridization
Lele14g2102 14 26647944 26650290 Lele15g0245 15 1375428 1380462 hybridization