Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0234 ATGGCTTTCAGGGGAAAAGTCACCCTCTTCGCTATATGTCGTGCTCTAATCTTAGCCAATAACCGGAGCAATATTTCCTTCCCCTCCTCTTTCTTCTGTAGGCGTCTCCCATGCAGATTTTCTACATTGCCTTTGCCTTCCTCTGCACATCCTTTCGTTAAAATCGCCAGCTTCAATAATACTAGTACTCGGTTATTTTGTAGCTCAAAAGCAAATCCCGCCAAGAAGAAGGTCGATACCAAGGTCAACTTTTCTCTATCCGATTCTGATTCTGAGGATGAAAACGAGGACGATTCTAAAAATCCGCAGAAAGAAATTAACAAGAATAAGAAGCTGCCACCGCCTTATGACCCCTTTAACAAGAAGCCGACGATTGAAGAGCCCAAGGATCCAAAAGATTTGCAAGAGATCTTTCACAACATGAGAAGCGGCGATGGCTTGTTAAATCACGCAGTCAAGATGTTCGACGCATTGTCCAAAGACGGTCTCACCCACGAGGCTTTGGAGCTGTTCGGTCAGATAAAAGACAAAGGTCAAATGCCCGACGTGGTGGCTCACACGGCCATTATCGAGTCCTATACCAATGCTGGTCAGCCCAAGGAGGCCCTCAAAGTTTATATGCGCATGCTGGCTTCTGGGGTGTCTCCTAATGCTTATACCTACACTGTTCTTATTAAGGGACTTGCCTCTGATTCCAAGTTTTTGGGAGATGCCCAGAAGTATGTGTTGGAAATGATGGAAAAGGGCATGAAACCCAATGCTGTGACTTACACGGCCGTGTTTGAGGGATTGGCTAGGGATGACAAAGCGGAAGAGGCCACAGAGTTTTTGGAGCAAATGAAGACCAAGGGATTTGTCGCTGACGAGAAGGCTGTGAGGGAAGTTCTGAGTAGCAAGAGGGGTCCCATTTTCAGAACCGTCTTGACTATTCTTTTTGGCAGGAACTCATCAACAACCTTGGCTTGGGTACATAGAATGCGAACCAATGCAGATTTTAGTGACCTCAAGGATTCGAACTCACATTCAAAGGAAAGTGCTAGCCTTATCCAAAACCTTTCAGCCAATCATACTAGCTCGTATTGGCTCATCCATTCATTTAAAGTTATTCCAATCGTTTTCTGA 1122 0.4528 MAFRGKVTLFAICRALILANNRSNISFPSSFFCRRLPCRFSTLPLPSSAHPFVKIASFNNTSTRLFCSSKANPAKKKVDTKVNFSLSDSDSEDENEDDSKNPQKEINKNKKLPPPYDPFNKKPTIEEPKDPKDLQEIFHNMRSGDGLLNHAVKMFDALSKDGLTHEALELFGQIKDKGQMPDVVAHTAIIESYTNAGQPKEALKVYMRMLASGVSPNAYTYTVLIKGLASDSKFLGDAQKYVLEMMEKGMKPNAVTYTAVFEGLARDDKAEEATEFLEQMKTKGFVADEKAVREVLSSKRGPIFRTVLTILFGRNSSTTLAWVHRMRTNADFSDLKDSNSHSKESASLIQNLSANHTSSYWLIHSFKVIPIVF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0234 373 MobiDBLite consensus disorder prediction 85 130 - -
Lele15g0234 373 Pfam PPR repeat 248 281 IPR002885 -
Lele15g0234 373 MobiDBLite consensus disorder prediction 97 111 - -
Lele15g0234 373 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Lele15g0234 373 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 154 289 - -
Lele15g0234 373 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Lele15g0234 373 TIGRFAM PPR: pentatricopeptide repeat domain 184 218 IPR002885 -
Lele15g0234 373 TIGRFAM PPR: pentatricopeptide repeat domain 219 254 IPR002885 -
Lele15g0234 373 TIGRFAM PPR: pentatricopeptide repeat domain 255 289 IPR002885 -
Lele15g0234 373 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Lele15g0234 373 Pfam PPR repeat family 181 229 IPR002885 -
Lele15g0234 373 Pfam PPR repeat 154 178 IPR002885 -
Lele15g0234 373 Gene3D Tetratricopeptide repeat domain 124 232 IPR011990 GO:0005515
Lele15g0234 373 Gene3D Tetratricopeptide repeat domain 233 301 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0234 Lele-ChrLele15 1315247 1316823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0234 34 314 Organic Solute Cotransporters AT5G03560 60.351 3.56e-109 322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0234 15 1315247 1316823 Lele05g0286 05 1605925 1606784 CCT
Lele15g0234 15 1315247 1316823 Lele06g0104 06 636936 637712 CCT
Lele15g0234 15 1315247 1316823 Lele07g0303 07 1663604 1664402 CCT
Lele15g0234 15 1315247 1316823 Lele08g0105 08 621733 622509 CCT
Lele13g2179 13 28365227 28367177 Lele15g0234 15 1315247 1316823 hybridization