Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0229 ATGAAGTTCCCACGACTGCGCCCTCCAATCTTACAAGCTGCCTCCAAAGCGATTATCCGATTACAAGCATTGCCTAGTGGGAGCATGGAAAGGCTCTGTGATGTAATGGCTCATGAGGTTTTTGAACTCACAGGTTATGACAGGGCTACGCGCTTTTTATTCATGAAGAACAAGGTTCGTATGGTAGTGGATTGTCGGGCAAAACATGTGAAGGTTCTTCAAGATGAAAACCTTCCATATGATTTAACCTTCTGCGGTTCAACCTTGAGGGCTCCTCACAGTTGCCATGTGCAATATATGCATAACATGAATCTAATTGCCTCCCTGGTTATGGCAGTTGTGGTCAATGACAGAGATGAAGATGGAGATAGCTCTGATTCTGTACAGCCACAGAAGAGAAGGAGACTCGGGGGCTAA 417 0.4556 MKFPRLRPPILQAASKAIIRLQALPSGSMERLCDVMAHEVFELTGYDRATRFLFMKNKVRMVVDCRAKHVKVLQDENLPYDLTFCGSTLRAPHSCHVQYMHNMNLIASLVMAVVVNDRDEDGDSSDSVQPQKRRRLGG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0229 138 SUPERFAMILY GAF domain-like 13 118 - -
Lele15g0229 138 Gene3D - 49 120 IPR029016 -
Lele15g0229 138 Pfam GAF domain 29 117 IPR003018 GO:0005515
Lele15g0229 138 ProSitePatterns Phytochrome chromophore attachment site signature. 90 99 IPR013516 -
Lele15g0229 138 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 41 138 IPR016132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0229 Lele-ChrLele15 1294532 1295063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0229 14 138 Histidine Kinase Gene Family AT1G09570 58.537 1.15e-56 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0263 05 1481123 1485659 Lele15g0229 15 1294532 1295063 CCT
Lele14g2121 14 26747561 26756630 Lele15g0229 15 1294532 1295063 hybridization