Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0228 ATGCGTGATACACCCCTAGGGATTATATCACAGAGCCCAAATATAATGGATCTCGTGAAATGTAATGGAGCTTGCCTCTTGTATAACGACAAGGTATGGGGATTAGGATTAGCACCAAGTGAATGGCAGATACGAGAGATAGCTTCATGGCTGTCAGAGTGCCATAAGGATTCCCCTGGTTTTAATACAGATAGCTTATCTGATGCAGGGTTCCCTGGGGCCGCTGCTCTTGGTGATGTGAAATCCGATGGGGTGGTGCAAAGCATCAACCCTGTGAAGAGGATGATGTTAGAAGGATGCATCCAAGATCATCATTCAAGGCGAAAGCATCAACCCTGTGAAGAGGATGATGTTAGAAGGATGCATCCAAGATCATCATTCAAGGCGTTCCTCGAAGTGGTGAAGTCAAGAAGTTTGCCATGGGAAGACTATGAAATGGATGCTATCCACTCCTTGCAGCTCATACTGAGAAATGCATTCAAAGAGACACAGATTAAGTACACGAGCACAAATGCAATCAATACAAGACTAAGTGTTCTGAAAATTAAAGGAATGCAAAAACTGGAAGTAGCGACAAGTGAGATGGTTCGGTTAATCGAAACAGCAACTGTACCAATTTTGGCAGTTGATATTGATGGGCTGGTCAATGGGTGGAATTCAAAAATTGCTGAGTTGACGCGTCTTCCAGTGGATGAAGCTATTGGAAAGTATTTGCTCACGCTTGTTGAAGATTCTTCAGTTGATAGAGTCAAGAAGATGCTTGTCATGGCGCTGCAAGGTGAAGAGCAGAATGTTCAATTTGAGATCAAGACACATGGGTCTAAGGCTGAGTCTACTCCTATCAGCTTAGTAGTTAATGCTTGTGCAAGTAGGGATCTTCAAGATAATGTTGTTGGGGTTTGTTTTGTGGCTCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACTCGTATCGAAGGTGATTACAAGGCAATTGAGCAGAACTCAAATCCTTTGATTCCCCCAATATTTGGTACAGATGAATTTGGCTGGTTTTGTGATTGGAAACTGGCTATGACAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGAATAAGATGCTTTCAGGGGAAGTGTTTGGTACCCAGGTAGCTTGTTGTCTTCTCAAGAATCATGAAGCTTTTGTTAATTTCGGTGTTGTGCTTAATAAAGCCATGACTGGTTTGGAAACGGGAAAGGTTGCTTTTGGTTTCTTTGCTCGGAATGGCAAGTACATAGAATGCCTTCTTTCTGAGTATGAAATTGGATTCGGAGGGAGCAATTCCCGGGTTCTTCTGCTTCTTGCGGTTAGCGAACCCAGAGCTCAACAAGCATTACATATTCAGCGCTTGTCTGAAAAAAACTGCCATGAAGAGACTAAAAGCTTTAACTTATATGAAAAGACAGATTTGGAATCCTTTATGCGGGATTATGTTCTCCCGTACTTGGATCTGGAGATGGTTGAATTCACTCTGCGTGATGTATCGGTTGCCTCCTTTAGTCAAGTAATGACGAAGAGCAATATAAAGGGCATCGAAATAGTGAATAATGTTGAAGATCGCATCAGGGCAGAAACCTTATATGGTGATAGTCTTAGACCTCAGCAGATCTTTGCTGATTTCTTATCCATTTCCATCAGTCTTACACCGTCTGGGGGTCAGGTCGTTATGGCGGCCTCTCTAACCAAAGATCAGCTAGGAAAATCTGTACAACTTGCCAATTTGGAGCTCAGCATAACACATGCGGGTATTGGGGTGACAGAAGCATTGCTGAACCAGATGTTTGGAAGCGAAGGACATGAATCGGAGGAGGGTGTTAACCTTCTCATCAGCAGAAAGTTGCTAAAGCTCATGAACGGTGATGTGCGTTATCTAAGGGAAGAGGACAAATCATCTTTCATCTGA 1929 0.4292 MRDTPLGIISQSPNIMDLVKCNGACLLYNDKVWGLGLAPSEWQIREIASWLSECHKDSPGFNTDSLSDAGFPGAAALGDVKSDGVVQSINPVKRMMLEGCIQDHHSRRKHQPCEEDDVRRMHPRSSFKAFLEVVKSRSLPWEDYEMDAIHSLQLILRNAFKETQIKYTSTNAINTRLSVLKIKGMQKLEVATSEMVRLIETATVPILAVDIDGLVNGWNSKIAELTRLPVDEAIGKYLLTLVEDSSVDRVKKMLVMALQGEEQNVQFEIKTHGSKAESTPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIEQNSNPLIPPIFGTDEFGWFCDWKLAMTKLTGWKREEVMNKMLSGEVFGTQVACCLLKNHEAFVNFGVVLNKAMTGLETGKVAFGFFARNGKYIECLLSEYEIGFGGSNSRVLLLLAVSEPRAQQALHIQRLSEKNCHEETKSFNLYEKTDLESFMRDYVLPYLDLEMVEFTLRDVSVASFSQVMTKSNIKGIEIVNNVEDRIRAETLYGDSLRPQQIFADFLSISISLTPSGGQVVMAASLTKDQLGKSVQLANLELSITHAGIGVTEALLNQMFGSEGHESEEGVNLLISRKLLKLMNGDVRYLREEDKSSFI 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0228 642 FunFam Phytochrome 1 116 - -
Lele15g0228 642 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 537 636 IPR003594 -
Lele15g0228 642 ProSiteProfiles PAC domain profile. 263 319 IPR000700 -
Lele15g0228 642 Pfam PAS fold 323 439 IPR013767 GO:0006355
Lele15g0228 642 Pfam PAS fold 194 307 IPR013767 GO:0006355
Lele15g0228 642 Pfam Phytochrome region 3 163 IPR013515 GO:0006355|GO:0009584
Lele15g0228 642 FunFam Phytochrome 187 317 - -
Lele15g0228 642 TIGRFAM sensory_box: PAS domain S-box protein 198 313 IPR000014 -
Lele15g0228 642 Gene3D PAS domain 183 321 - -
Lele15g0228 642 Gene3D - 1 166 IPR043150 -
Lele15g0228 642 PANTHER OS08G0260000 PROTEIN 114 420 - -
Lele15g0228 642 ProSiteProfiles Histidine kinase domain profile. 479 642 IPR005467 -
Lele15g0228 642 SUPERFAMILY GAF domain-like 2 163 - -
Lele15g0228 642 CDD PAS 202 307 IPR000014 -
Lele15g0228 642 Gene3D - 496 642 IPR036890 -
Lele15g0228 642 SUPERFAMILY PYP-like sensor domain (PAS domain) 197 303 IPR035965 -
Lele15g0228 642 SMART pas_2 193 259 IPR000014 -
Lele15g0228 642 SMART pas_2 322 391 IPR000014 -
Lele15g0228 642 ProSiteProfiles PAS repeat profile. 323 375 IPR000014 -
Lele15g0228 642 PRINTS Phytochrome signature 8 28 IPR001294 GO:0006355|GO:0009584
Lele15g0228 642 PRINTS Phytochrome signature 123 141 IPR001294 GO:0006355|GO:0009584
Lele15g0228 642 PRINTS Phytochrome signature 285 302 IPR001294 GO:0006355|GO:0009584
Lele15g0228 642 PRINTS Phytochrome signature 305 325 IPR001294 GO:0006355|GO:0009584
Lele15g0228 642 PRINTS Phytochrome signature 213 228 IPR001294 GO:0006355|GO:0009584
Lele15g0228 642 PRINTS Phytochrome signature 194 210 IPR001294 GO:0006355|GO:0009584
Lele15g0228 642 ProSiteProfiles PAS repeat profile. 191 261 IPR000014 -
Lele15g0228 642 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 493 639 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0228 Lele-ChrLele15 1291147 1294364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0228 1 642 Histidine Kinase Gene Family AT1G09570 58.900 0.0 768