Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0226 ATGGGGGTAAAGGGTTTAACAAAGCTGTTAACGGATAATGCCCCCAAAGCTGTAAAGGAGCGTAGCTTCCAAAGCTATTTCGGCCGCAAGATTGCCATTGACGCTAGCATGAGCATGTACCAGTTCCTTGTCCGTAGTCTCCAGCCTTCACTCTGCTTCCCTCTTATCACGTTTACTTATGTGGTTGTCGTGGGAAGAAGTGGGACTGAGATGCTCACCAATGAGGCTGGTGAAGTAACTAGTCATTTGCAAGGCATGTTTACCCGGACAGTCAGACTTCTAGAAGCCGGAATGGAGCCAGTATATGTTTTTGATGGGAAGCCACCTGATCTGAAGAAGCAGGAGCTGGCTAAACGTTACACAAAGAGGGCTGAAGCTCATGAGGATTTGTCAGAGGCCCTTGAGTCTGGCAACAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTCAAGGTGACAAAGCAGCATAGCGACGGTTGTAAAAGACTTTTATCACTCATGGGAGTGCCTGTTATTGAGGCGACATCAGAAGCTGAAGCACAGTGTGCTGCCCTTTGCAAATCTGGAAAGGTTTATGCAGTGGCTTCTGAAGACATGGATTCATTAACATTTGGAGCTCCTAGATTTCTTCGCCATCTAATGGTTCCTAGCTCAAAGAAAGTTCCAGTTATGGAATTCGAAGTTGCCAAGATATTGGAGGAGCTAAATCTGACCATGGATCAGTTTATAGACTTATGTATTCTTTCTGGATGTGATTATTGTGGAAGCATTCGAGGTATTGGTGGTAAGACTGCTTTGAAGCTCATTCACCAGCATAGCTGTATAGAGAACTTATTGAAGAACATAAATAAAGAGAGGTACCAGATACCAGATGATTGGCCATATCAGGAGGTTAGGCAGCTTTTTAAGGAACCGGCAGTCTTAGCTGAAGAAAAGCAACTAGACCTTAAGTGGACTGCTCCTGATGAAGAAGGTTTAATGACATTTCTGGTAAATGAGAATGGATTCAACAGAGATAGGGTGACAAAGGCGATAGAAAAAATTAAGGCAGCAAAGAACAAGTCTTCACAGGGCCAATCAGAATCTGATTTTAAGCCAATGGCGAACTACTCTGCACCCATTAAAGGCAAGGGGAGCAAATGCATGCTTAGATCCTTTAAACCTACAACTAAGTGTAAGATGTTATCCCCACAACTTTATAACTGGTCAAGGCCCATGGTTATCGGCAACCTGAGCATTGCCTGCGCGGGTTTCAAGCTATCTGTCATGACATAG 1275 0.44 MGVKGLTKLLTDNAPKAVKERSFQSYFGRKIAIDASMSMYQFLVRSLQPSLCFPLITFTYVVVVGRSGTEMLTNEAGEVTSHLQGMFTRTVRLLEAGMEPVYVFDGKPPDLKKQELAKRYTKRAEAHEDLSEALESGNKEDIEKFSKRTVKVTKQHSDGCKRLLSLMGVPVIEATSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMVPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCGSIRGIGGKTALKLIHQHSCIENLLKNINKERYQIPDDWPYQEVRQLFKEPAVLAEEKQLDLKWTAPDEEGLMTFLVNENGFNRDRVTKAIEKIKAAKNKSSQGQSESDFKPMANYSAPIKGKGSKCMLRSFKPTTKCKMLSPQLYNWSRPMVIGNLSIACAGFKLSVMT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0226 424 CDD H3TH_FEN1-Euk 240 308 - -
Lele15g0226 424 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 237 370 IPR036279 -
Lele15g0226 424 Hamap Flap endonuclease 1 [fen]. 1 365 IPR023426 GO:0016788
Lele15g0226 424 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 164 181 IPR006084 -
Lele15g0226 424 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 242 257 IPR006084 -
Lele15g0226 424 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 100 119 IPR006084 -
Lele15g0226 424 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lele15g0226 424 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 185 205 IPR006084 -
Lele15g0226 424 CDD PIN_FEN1 4 350 - -
Lele15g0226 424 Pfam XPG I-region 168 252 IPR006086 GO:0004518
Lele15g0226 424 SMART xpgineu 165 237 IPR006086 GO:0004518
Lele15g0226 424 SMART xpgn3 1 126 IPR006085 GO:0004518
Lele15g0226 424 SMART HhH_4 239 272 IPR008918 GO:0003677|GO:0003824
Lele15g0226 424 FunFam Flap endonuclease 1 237 304 - -
Lele15g0226 424 FunFam Flap endonuclease 1 1 239 - -
Lele15g0226 424 Gene3D - 2 236 - -
Lele15g0226 424 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 367 IPR006084 -
Lele15g0226 424 Pfam XPG N-terminal domain 1 45 IPR006085 GO:0004518
Lele15g0226 424 Pfam XPG N-terminal domain 74 126 IPR006085 GO:0004518
Lele15g0226 424 Gene3D - 237 304 - -
Lele15g0226 424 SUPERFAMILY PIN domain-like 2 252 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0226 Lele-ChrLele15 1283890 1288197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0226 1 402 Core DNA Replication Machinery Family AT5G26680 74.129 0.0 631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2186 13 28388422 28393400 Lele15g0226 15 1283890 1288197 hybridization
Lele14g2123 14 26759769 26763858 Lele15g0226 15 1283890 1288197 hybridization