Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0193 ATGCTTCGACTTCAAGAACTGGCGCCTCCGTTCCGTTCATGTGATCAGGCGACACTTTTCTGCTTCTTACTTTTGCAGGATTTCCAGGGTTTCTTGAATGACTTGCAAGATTGGGAACTTCCTCGGAAGGACAAAGAGCGAAAAATGAAGTCACAAGCGTCGCAAATGGAAAAAGTTGCCATCAAAGTATTTCCTTATCGAGTCTCGAGTAGAGTTGAACAGGCAATCAGATATTATGTCAATGAACTTAATTGTTCATCTTCTCAAAATACTGGATCAGTGGGTGGGGAGACAACATCAAGAGGGGAAACTTCATCGTTTGATTTTTCGAAAAGTACTTCAGGACAATATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATAGTAGTCTCTCCATTGAAGATGTTCCCAATGCTGCTTCAGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGTTATTCAAGAAGTATTGCCTTCTCACCAACAGCTGCTGAGGATGACTGTACAGAGGCCTTATATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACTGCTAGAAAAGAACTTGGCAAACTAAAAGAAGCAATGGAGGATGCTGAATTTGCTCTGCACTTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATAAAATCTTTGTATGAGAATGAAATTCTTCAGAAAGCATCTGGAGCTCTGAGAAGCTCTCTACAGGGAAATCAAAAGGTGGGAAAGTCGGATACAAACATTGATAGGGGAACCATCCATCCTGTTCCAAACCGTACTAAAAAATCAGGGGCTGCTGATGTTCAAGATCACACAAAGAGATATGACAGAATTAACAAGCAAGAAATGAAGGCATCCGTTCAACATCTTGCTTCACGTGTATCTTCTCGAGTCATGGCTGAAGCTGCAAAAAATATAACACCGCCAAGTTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGATTTTCAGGTGATCCTGCGCTGCAGGCTCAGCTGTTAAAGGCCGTATCTCCTCAAGATTTACCAAAGATATTAAAAAATGCCTTATCTTCTGTGCTACTAATGGACATCATTAAGTGCGTGGCATCCTTTTTCACTGAAGACACAGCTCTGGCCGTCAGTTACATAGAGCATTTGACCGAGGTTTCAAGATTTGACATGCTCATTATGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGATCTGGGAGGAAGTGTTCTGCAGCGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGGCAACCTCCGCTCCAAATACTGCATTGAAGATTGA 1353 0.4124 MLRLQELAPPFRSCDQATLFCFLLLQDFQGFLNDLQDWELPRKDKERKMKSQASQMEKVAIKVFPYRVSSRVEQAIRYYVNELNCSSSQNTGSVGGETTSRGETSSFDFSKSTSGQYDFSRNKDSFDHVHSSLSIEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSIAFSPTAAEDDCTEALYLDDRYIKAYSRRATARKELGKLKEAMEDAEFALHLEPENQEIKKQYADIKSLYENEILQKASGALRSSLQGNQKVGKSDTNIDRGTIHPVPNRTKKSGAADVQDHTKRYDRINKQEMKASVQHLASRVSSRVMAEAAKNITPPSSAYQFEVSWRGFSGDPALQAQLLKAVSPQDLPKILKNALSSVLLMDIIKCVASFFTEDTALAVSYIEHLTEVSRFDMLIMCLTSTDKHDLRKIWEEVFCSEATPMEYAEILGNLRSKYCIED 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0193 450 Pfam Tetratricopeptide repeat 145 173 IPR001440 GO:0005515
Lele15g0193 450 Gene3D Tetratricopeptide repeat domain 174 245 IPR011990 GO:0005515
Lele15g0193 450 ProSiteProfiles TPR repeat profile. 141 174 IPR019734 GO:0005515
Lele15g0193 450 Pfam Potential Monad-binding region of RPAP3 326 415 IPR025986 -
Lele15g0193 450 SMART tpr_5 141 174 IPR019734 GO:0005515
Lele15g0193 450 SMART tpr_5 190 223 IPR019734 GO:0005515
Lele15g0193 450 Coils Coil 196 216 - -
Lele15g0193 450 MobiDBLite consensus disorder prediction 252 289 - -
Lele15g0193 450 Gene3D Tetratricopeptide repeat domain 130 173 IPR011990 GO:0005515
Lele15g0193 450 MobiDBLite consensus disorder prediction 88 116 - -
Lele15g0193 450 ProSiteProfiles TPR repeat profile. 190 223 IPR019734 GO:0005515
Lele15g0193 450 SUPERFAMILY TPR-like 139 235 IPR011990 GO:0005515
Lele15g0193 450 PANTHER OS05G0129900 PROTEIN 26 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0193 Lele-ChrLele15 1141275 1145389 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2220 13 28532522 28533430 Lele15g0193 15 1141275 1145389 hybridization
Lele14g2153 14 26910274 26914521 Lele15g0193 15 1141275 1145389 hybridization