Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0186 ATGGGGCATGACCATTCTGTTTCGTACAACGACCTCGAGATTCAAGTCCTGAATTCTGTCTTTCTCGAGGGCGAAGACTTGGTTCCATACAGGGAATGGCGTCCTCTGAAAGAAGCGATCGGTGGTTCCTTTGTAGTTTCCGAGTCTGACTTCAACATAAGGATGGCACGGAGGAGGCAAGTCTCGAGCCCTGACGACGAATTGTATTTGTTCAACGAGATCATATCTCCTCGCGAGGCGCCGGGGTCGACAATACGTTCAGAAGAAAATTTGATCGAGAGGAATATTTGGAACGAGCTCGGGAGCTTTCGCTTAGTTAATCGTGACATTTGTGAACAGGAAGAGGAGGCGCGATCTAGACCTAAAACCAAAGGTCCTCCAGTGCAGAGGAAACCCTTGAAACATAGAGATTATGAGGTGGACCTTGAATCCCGCTTGGGGAAGACTCAGGTTGTTACTCCAGTTGCACCTCTAAGCCAGCAGTTTATTTGTTTCTTGAATGCCGGATACTACTGCTCAGTTTGTGAGTGTGTAGTAAAGGATTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAACGAGCTCTGGGAATGTCTATGCGAGTAGAACGTGCTTCTCTGTCACAGGTTCAGGACCGATTTGAAGTTCTTAAAAAGCGGAAAGATCTTGGAAGCTTCACAGAGCAAGATCTGGATGACCGGATCTTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGACAGCGACGGGAAAGGAAGAAAGAGAAGGTCAGCAGTTTGAAAGAGAAGGAAGTTGAAGAAGCACCTGAAACAGATCCTGATGTTGCCGCTATGATGGGGTTTGGTGGCTTTCGGTCATCCAAGAAATGA 876 0.4635 MGHDHSVSYNDLEIQVLNSVFLEGEDLVPYREWRPLKEAIGGSFVVSESDFNIRMARRRQVSSPDDELYLFNEIISPREAPGSTIRSEENLIERNIWNELGSFRLVNRDICEQEEEARSRPKTKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQFICFLNAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLSQVQDRFEVLKKRKDLGSFTEQDLDDRILKQQQEEEERKRQRRERKKEKVSSLKEKEVEEAPETDPDVAAMMGFGGFRSSKK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0186 291 SMART ZnF_U1_5 167 201 IPR003604 GO:0003676|GO:0008270
Lele15g0186 291 Gene3D Classic Zinc Finger 166 202 - -
Lele15g0186 291 Coils Coil 238 265 - -
Lele15g0186 291 MobiDBLite consensus disorder prediction 237 272 - -
Lele15g0186 291 MobiDBLite consensus disorder prediction 114 133 - -
Lele15g0186 291 MobiDBLite consensus disorder prediction 237 291 - -
Lele15g0186 291 SUPERFAMILY beta-beta-alpha zinc fingers 169 205 IPR036236 -
Lele15g0186 291 Pfam Zinc-finger of C2H2 type 170 194 - -
Lele15g0186 291 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 108 291 IPR040107 GO:0000398|GO:0005681
Lele15g0186 291 FunFam zinc finger matrin-type protein 2-like 166 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0186 Lele-ChrLele15 1109225 1113425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0186 112 232 C2H2 Transcription Factor Family AT3G05760 78.512 2.24e-64 197