Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0164 ATGGGGATCGATCTTAAAGCCGGCGGGAAGAGCAAGAAGACCAAAAGGACGGCACCCAAGTCCAATGATATCTACCTCAAGCTCCTTGTCAAGCTTTATCGCTTTCTAGTCCGGAGAACTGAAAGCAGTTTCAATGCTGTAATACTCAAGCGTCTTTTCATGAGCAAAGTCAACAAGGCTCCGCTTTCTCTGTCAAGATTGATAAAGTTCATGAAGGGGAAGGAAGATAAGACTGCAGTGTTGGTAGGGACTGTGACTGATGATATACGAGTTTATGAAGTTCCTTCTTTGAAAGTTGCAGCACTCCGGTTTACAGAGACGGCACGTGCAAGGATAGAGAAGGCTGGCGGGGAGTGCTTGACTTTTGATCAGCTGGCCCTCAGGGCTCCTCTGGGACAGAACACGGTCCTTCTTAGAGGCCCCAAGAATTCTCGTGAGGCTGTTAAGCATTTTGGCCCTGCTCCTGGTGTGCCACACAGCCACACCAAGCCTTATGTGCGATCAAAGGGAAGGAAGTTTGAGCGTGCTAGAGGAAGAAGGAACAGCAAAGGATTTAGGGTTTAA 564 0.484 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTESSFNAVILKRLFMSKVNKAPLSLSRLIKFMKGKEDKTAVLVGTVTDDIRVYEVPSLKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSKGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0164 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Lele15g0164 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Lele15g0164 187 MobiDBLite consensus disorder prediction 164 187 - -
Lele15g0164 187 MobiDBLite consensus disorder prediction 151 187 - -
Lele15g0164 187 FunFam 60S ribosomal protein L18 1 187 - -
Lele15g0164 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Lele15g0164 187 Gene3D - 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0164 Lele-ChrLele15 1007329 1008940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0164 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 4.52e-105 298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0164 15 1007329 1008940 Lele05g0205 05 1102208 1111879 CCT
Lele15g0164 15 1007329 1008940 Lele06g0012 06 72926 82490 CCT
Lele15g0164 15 1007329 1008940 Lele07g0207 07 1113353 1122884 CCT
Lele15g0164 15 1007329 1008940 Lele08g0013 08 68697 78267 CCT
Lele15g0164 15 1007329 1008940 Lele15g0164 15 1007329 1008940 ECH
Lele13g2248 13 28668746 28670362 Lele15g0164 15 1007329 1008940 hybridization
Lele14g2182 14 27025097 27027502 Lele15g0164 15 1007329 1008940 hybridization