Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0161 ATGCAATTTTATGATTTCAATTGTTTTGCAGGAAAAATGAGTAGGCTTTCAAGTCGTACTATTTATGTTGGCAATCTTCCTGGTGATGTTCGTATGAGAGAAGTTGAGGATCTTTTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAAATCCCTCCAAGACCTCCTGGTTATGCTTTTGTGAAGTTTGAGGATCGTCGTGATGCTGAAGATGCTATTCGCTATCGAGATGGTTCTAATTTTGATGGTTTCCGATTGCGAGTTGAATTTGCGCATGGTGGGCGGGGATATTCATCATCAGTTGACCGTTACAGTAGTTATAGCAGTGGTGGTGGTAGCCGTGGAGTTTCCTGGCGTTCGGACTACCGTGTGCTGGTCACTGGATTACCCCCGTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGCGATGTATGTTTCTCTGAAGTCTTTCGGGAGCGTGGTGGCATGACTGGTATCGTGGATTATACCAATTATGATGATATGAAGTATGCTATCAGGAAACTTGATGACTCAGAATTCCGGAATGCATTTTCTCGTGCATACATACGGGTGAGGGAATATGATCGTCGGAGTTATTCTAGGAGTCCCAGCCGTGATTCAAGGAGGAGCTATTCTAGAAGCTATAGCCGCAGTCCTTATAGGTCACGAAGTCGAAGCCGCAGTTGGAGTCGGGATCCCAGTTATAGAGGCAGGAGCAGAAGTTTATCACCAAAGGTAAAACACTCGAGACGTTCAATATCTCTTTCAAGATCCCGCTCAAGATCCAGATCTCCAAATTCATCGCCTTCACCTTATAGAAGTTACAGTCCTCGCCGTAGAAGCTTGTCGCGATCCCGTTCACCTTCGGTGAGGTCTGACCGCAGCAGATCTGTCGACTCTGGATATCGCCATTGA 930 0.4559 MQFYDFNCFAGKMSRLSSRTIYVGNLPGDVRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVKFEDRRDAEDAIRYRDGSNFDGFRLRVEFAHGGRGYSSSVDRYSSYSSGGGSRGVSWRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSYSRSPYRSRSRSRSWSRDPSYRGRSRSLSPKVKHSRRSISLSRSRSRSRSPNSSPSPYRSYSPRRRSLSRSRSPSVRSDRSRSVDSGYRH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0161 309 Gene3D - 122 200 IPR012677 -
Lele15g0161 309 SUPERFAMILY RNA-binding domain, RBD 18 191 IPR035979 GO:0003676
Lele15g0161 309 MobiDBLite consensus disorder prediction 200 309 - -
Lele15g0161 309 MobiDBLite consensus disorder prediction 263 288 - -
Lele15g0161 309 SMART rrm1_1 124 193 IPR000504 GO:0003723
Lele15g0161 309 SMART rrm1_1 20 90 IPR000504 GO:0003723
Lele15g0161 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
Lele15g0161 309 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 17 275 - -
Lele15g0161 309 Gene3D - 12 120 IPR012677 -
Lele15g0161 309 CDD RRM2_SF2_plant_like 123 198 - -
Lele15g0161 309 MobiDBLite consensus disorder prediction 291 309 - -
Lele15g0161 309 MobiDBLite consensus disorder prediction 246 262 - -
Lele15g0161 309 MobiDBLite consensus disorder prediction 200 217 - -
Lele15g0161 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Lele15g0161 309 CDD RRM1_SF2_plant_like 20 90 - -
Lele15g0161 309 FunFam serine/arginine-rich splicing factor SR34A-like 123 200 - -
Lele15g0161 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 88 IPR000504 GO:0003723
Lele15g0161 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0161 Lele-ChrLele15 987041 990085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0161 20 92 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 6.86e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2251 13 28681214 28686323 Lele15g0161 15 987041 990085 hybridization
Lele14g2185 14 27033704 27038787 Lele15g0161 15 987041 990085 hybridization