Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0154 ATGGCTGCAACAGAGACAAAAGTGGAAGTGAAAGAAGCGGAAGAACAGATAGAGCCCCTTATGTGCAAGGCAAGGCATTGTTCAGTTATTAACATTACGTACGTGTTGAAAGTCTCCATTCACTGCGAAGGCTGCAAGAGGAAAGTCAAGAAAATACTACAGAGTATAGATGGTGTTTACAACATAAACATAGATTTGAGGAAACAGAAAGTCATGGTAAAGGGGAACGTAGACAGCAAGACACTGATAAAGAAGCTAGAAAAATCAGGGAAACATGCCGAGTTGTGGCCTGAAAAGTCTGATTCAAAAAAGAAAAAGCAAGGGAAATCTGAGAACAAAGAGAAACAGAGAGACCGCGAGAGCAGAGAAGATACCAGCCAAGTCTGCGACGAAGATGAAAGGGAAGGAGGTGTTAAAGTTGTAGTCCAAGACCCGACCAAAAATGGCGAAGGATGTGGATGTGCAACTGGAAAAAGTGGTGTACAGTTTCAAGAACAGAGGTCAGAGCGGAAGCAAGTTGTGACTATATCGGCCGGTGACCAGCCGCCACTGACGGGGGACAACGAAAATGAAGCGGGGAACGAGAGAAGTGGCGGTGGAAGTAGAAAGAAGAAAAAGAAGGGGCGAAAAAGTAATAGTGGAACCGAGGGCGGTGAACGTTCAGGTGTTGCTCCGGCGAACCATGCACAGGTTCAAGTACTGGAAGCAGTTTCAATTCCAAGCCTATCCAATCAGAATCTTCAAGGTCATCACATTGGCCATCAATACCCACAACATTCCTACTACGCACCACCTGCTTATACGTTGTACCATCACACAGCACATCCCAACAACAGCTACAGCATAGCTTATTATAACTCCAAAGGATCGTATTCGTGCGCCCATGCACACCCAAACGACGAGACGGGAATGGAGCCTCCGCCGTACGACTCATACACATCGCAGCCGTCGGATTCTTTTGCGTTCCTGAGTGACGAGAATCCAAATGGATGCGCAGTAATTCCTGGAGTCTCTATCAGTCCTTGGTCTCCAAATAGTTTCAGACTAATTAGTGATAATGCGGGTTCTGTGAGTGTAGATGAGTGTGGATTTGGCAAACGGTGGATGTGGTTACCATATTTTAACCGTTCCCGGCTTCCCGCCAAGGCGCCAACCCTAATTTCGATCATCCTTCCCGCGAGTCCCAGAGGTCGGTTAATGGAGTTCGCGTTGAGTGATAACGCCCTGAAAACCTTTGCTCGCTGCATCACTTGTCTCGCCCGCATCGGAAATGAGCTTTCTATTCAAGCCTCTTCCTCTCAGCTTGTTTTCCACGCTCTCAATTCATCGCGATCAGCATATCAATCCGTTACCTTCAAACCAGGCTTCTTTGACGTCTATACAGTATCCGGAAACCTGGCGCAATTAAGTGTACTTTTGAAGGCTATTTGTTCAGTTTTCAGGACACCTATAACAAATATTGATCGTTTGACTGTGAGACTGCCTAGTCCTGACGCTTCTAAAGTGCAGTGGATCTTGGAATGCTGTAGTGGTATGAGGAAAACCTATTGGATTACTTGCAATAACGAATCTGACATACAGCACTTATCCCTTGATAGGCAAAAATTCCCAAGTAACTTTGTTGTGAGGCCTCAAATTCTCAACAGGTTACTAGCTAATTTTCAGTCATCTCTCCAAGAGATTACCATCATCGCAACAGAACCTTCCTCATTACCTTCTGATGCTGCAAGTGAAATTGGTGGAAAGGCTGTTGAACTTCGAAGTTATTTGGACCCAACCAAGGATAATGACTCATTGCTACACACCCAGTTGTGGATTGATCCTAAAGAGGAATTTTTACAGTATATTCACAATGGAGACCCTGTTGATGTGACTTTCAGTGTAAAAGAACTGAAGGCATTTCTTTCATTCTGTGAAGGCTGTGAAGTTGACATCCATTTACATTTTGAGAAAGCTGGAGAGCCCGTTCTAATGGCACCTAAATTTGGTTTGGAAGATGGGCCTGATTCAAATTTTGATGTCACACTTGTATTGGCAACCATGTTGATATCTCAGCTACATGAAGTTGCCTCAGAAGTTCCACAGGCATCTACAAGAATTCATGCTCAAACTGAAAAGGGTGGATCTCATGTGCCGCAAGAGAATTGCAAAACAAATGCGTCCGAGCTTCCATCTGATCACACCCGTATATGGTCTGACCTATCAGGAAGTGCAACTAAAAATACCAGTGGTATAGAAGAAAGACAGGCGCAAAGAGAAAATTTTTTGAATGATAATGAACAGAGGGAAATTCAAAGGATTGTTACAATGCAAATTTCAGGAGTAGCATCGGTTGCGAGAAATACTTTTGTTGAGAACAACTCCTGCCATCCAACCGAGGAAGATCGTCTTCAAGAACCTCAAGATGGGATACAAGGTAATGGGCAAGGCTTTTCTCAGCATCACCCTAGCAACTGGGTAGAATCTGAAGAGGATGATGATGATGGGGATGAGAACGAGCAGTATGTTCAGTCAACACCATCATACTATGAGGAATCATAA 2541 0.4435 MAATETKVEVKEAEEQIEPLMCKARHCSVINITYVLKVSIHCEGCKRKVKKILQSIDGVYNINIDLRKQKVMVKGNVDSKTLIKKLEKSGKHAELWPEKSDSKKKKQGKSENKEKQRDRESREDTSQVCDEDEREGGVKVVVQDPTKNGEGCGCATGKSGVQFQEQRSERKQVVTISAGDQPPLTGDNENEAGNERSGGGSRKKKKKGRKSNSGTEGGERSGVAPANHAQVQVLEAVSIPSLSNQNLQGHHIGHQYPQHSYYAPPAYTLYHHTAHPNNSYSIAYYNSKGSYSCAHAHPNDETGMEPPPYDSYTSQPSDSFAFLSDENPNGCAVIPGVSISPWSPNSFRLISDNAGSVSVDECGFGKRWMWLPYFNRSRLPAKAPTLISIILPASPRGRLMEFALSDNALKTFARCITCLARIGNELSIQASSSQLVFHALNSSRSAYQSVTFKPGFFDVYTVSGNLAQLSVLLKAICSVFRTPITNIDRLTVRLPSPDASKVQWILECCSGMRKTYWITCNNESDIQHLSLDRQKFPSNFVVRPQILNRLLANFQSSLQEITIIATEPSSLPSDAASEIGGKAVELRSYLDPTKDNDSLLHTQLWIDPKEEFLQYIHNGDPVDVTFSVKELKAFLSFCEGCEVDIHLHFEKAGEPVLMAPKFGLEDGPDSNFDVTLVLATMLISQLHEVASEVPQASTRIHAQTEKGGSHVPQENCKTNASELPSDHTRIWSDLSGSATKNTSGIEERQAQRENFLNDNEQREIQRIVTMQISGVASVARNTFVENNSCHPTEEDRLQEPQDGIQGNGQGFSQHHPSNWVESEEDDDDGDENEQYVQSTPSYYEES 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0154 846 MobiDBLite consensus disorder prediction 704 750 - -
Lele15g0154 846 MobiDBLite consensus disorder prediction 788 846 - -
Lele15g0154 846 CDD HMA 35 94 IPR006121 GO:0046872
Lele15g0154 846 MobiDBLite consensus disorder prediction 802 817 - -
Lele15g0154 846 MobiDBLite consensus disorder prediction 704 757 - -
Lele15g0154 846 Gene3D - 30 94 - -
Lele15g0154 846 Pfam Heavy-metal-associated domain 37 92 IPR006121 GO:0046872
Lele15g0154 846 SUPERFAMILY DNA clamp 409 518 - -
Lele15g0154 846 Coils Coil 103 123 - -
Lele15g0154 846 Pfam Rad9 412 681 IPR007268 GO:0000077|GO:0030896
Lele15g0154 846 ProSiteProfiles Heavy-metal-associated domain profile. 39 95 IPR006121 GO:0046872
Lele15g0154 846 PANTHER DNA REPAIR PROTEIN RAD9 400 832 IPR007268 GO:0000077|GO:0030896
Lele15g0154 846 SUPERFAMILY HMA, heavy metal-associated domain 33 97 IPR036163 GO:0046872
Lele15g0154 846 FunFam cell cycle checkpoint control protein RAD9A 401 681 - -
Lele15g0154 846 MobiDBLite consensus disorder prediction 159 195 - -
Lele15g0154 846 Gene3D - 401 681 - -
Lele15g0154 846 FunFam Copper transport protein ATOX1 31 98 - -
Lele15g0154 846 MobiDBLite consensus disorder prediction 88 140 - -
Lele15g0154 846 MobiDBLite consensus disorder prediction 88 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0154 Lele-ChrLele15 944941 951906 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0154 15 944941 951906 Lele13g2266 13 28776579 28779048 CCT
Lele15g0154 15 944941 951906 Lele14g2202 14 27120825 27123350 CCT
Lele15g0154 15 944941 951906 Lele15g0146 15 894153 896957 CCT
Lele15g0154 15 944941 951906 Lele16g0151 16 915661 918188 CCT
Lele13g2256 13 28719895 28727446 Lele15g0154 15 944941 951906 hybridization
Lele14g2192 14 27072057 27077291 Lele15g0154 15 944941 951906 hybridization