Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0147 ATGGATCATGCTCGATCGACCTCGGGGAATGCCGAGGATAACGTGGGGATTCCAGATGACTTGCGATGCAAGAGGTCGGATGGGAAACAGTGGAGATGCACTGCCATGTCCATGCCAGATAAAACTGTCTGTGAAAAGCACTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCCATGAGAGCTAGTCTGAAGAAGGCTAAGAGAAAGTCATTAGGCGAGAGTGACATTTATCTAGAGAGCAAGAGTGAGGATTTTGACATGCCACTTGCAAGCATGAAAGTTGAACAGCATTCGGCCTCTGGAAAGAACAGGGCATCAAAAAATCAGTTCAGATATACAGCAGAGACACCAACCACAAAGACCACCTCTGTGCGCCATGCTCCAAAGCCAGATGACGATTCACCAGATGATATTCCGCATTATGAAGAAAATTGGATGTCTTACGAGTCACCACCTACTTCTCGAATGGACTTATCCAGGAAAAGATCTCGAACAAATTTAGATGCCAATGCTGCTACAGTTGTATGCCAGGAATGCTCAGATGGAAGTACAGATTCCTCTGATGACATTCGTGGGCAAACTTGCCATCAATGTCAAAGGAATGATAGAGACAGAGTTATTTGGTGTTCAAGATGTGATAGGAGAGGATACTGTGAGAGCTGTATATTAACATGGTACTCAGATATGCCATTGGATGAAATTCAGAGGATTTGTCCTGCCTGCCGTGGCACCTGTAATTGCAAAGTTTGCTTACGTGTTGAGAATTCAATGAAGGTCCGGATTTGGGAGATACCTGTTCAAGACAAGTTACAGTATCTCCATGTGCTGCTGTCATCAGTACTTCCTGTGGTTAAGCAGATCCATCATGAGCAGTGTTATGAAGTTGAACTTGAAAAGAAGTTGCGTGGGATTGAAATAGATCTTCCCAGGACAAAACTGAATGCAGATGAGCAAATGTGCTGTAATTTCTGTCGGATACCCATTACTGATTATCACCGGCACTGCCCAAATTGTACATATGATTTATGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAAATGTAAATCCAGAAAAAGTAACCCCAACAGATGAAGCAAAACTTTCAAATCAAAATTTGCTATATAAGTTGCCTGATTGGAGATCCAACGGTGATGGTAGCATTCCATGCCCCCCAAAGAAATATGGTGGCTGTGGGTATTCACCATTGAATTTAAACCGCATCTTCAAGATGAACTGGGTTGCAAAATTGGTGAAAAATGTGGAGGAGATGGTTAGGGGCTGCCAGATTAGTGAAGTTGGAGGATCAGAAACCAAGTTGAATGATCTAAAACTTTGCCAATATTCTCACAGGGAGGCCAGCTATGGTAATTATCTGTACTGTCCAACATCTGAAGATCTCAAAACTGATGGGATAGGAAATTTTAGAAAGCACTGGAAAATTGGTGGACCCATTATTGTCAAGCAAGTATTTGATAGGTCATCAAGCTGGAATCCAATGGCCATATGGAGAGGGGTTCAAGAGACAGCAGATGAGAAAATGAAAGAAGTTGAGAACAGAGTGGTTAAGGCCATGGATTGTTTAACCTGGACAGAGATAGATATCAAACTTAATGAATTCATGAAAGGATACTTTGAGGGGCGTACCCGTGAAAATGGCTGGCCACAATTATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTTTATTGCATCAAAGACCTGAATTTATCAGCAAACTGCCTTTGCTTGAATATATTCACTCGAAATGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCATATGGGGTCAATGAGGAACATGGTAGTGGTGACTCAGTGACCAATCTCCACTTCAATATGCTTGACATGGTCTATCTTTTGGTCCATACGAGTGAAGTGAAGCTGAAGAACTTGCAGGGAACGGAAAGTGAAAAGATACAGAAATCATCTGATGCAAGTGAATTGCCTGTGGATCCACAAATATGTTCAGTGGGGAGTTCAGCTGATTCATCACTTGGCACAGAAAGAAACGGACTGGATTTGGATTCAAATAAGAAAACGTCAATTATCAATGAAGGGTTTGAAAATTATTCTAGTGCTGAAGGGGATATGAACAATTCTGAACTTCCAGTCAGGGATGGAGATGTTGTGGAGAGAACAGATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGCTGACTGAATTTCTAAAAGCACATTGGAAAGAATTTGCACAGCCAGATGATATGGTTACAAGGCCTCTTTATGATGGGGTTATTTTTCTTAACGGACACCATAAAATGGAGTTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTGAACAGTGTGTAGGGGAAGCTGTATTTGTTCCTGCAGGGTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGCTGGGCCTTGATTTCTTATCACCGGAAAGCCTGGGGGAGGCTGTGAGGTTGGCTGAGGATGTCCGCTGTCTGCCAAATGAACATGAAGCCAAGCTTCAAGTGTTGGAGGTTGGGAAGATATCTCTTTATGCAGCGAGTTCAGCCATCAAAGAAGTTCAGAAACTCGTTCTTGACCCAAAACTTGGTGCGGAGATTGGATTTGGGGATCCCAATCTGACTGCAATGGTTTCGGAAAACTACGAGAAGATGGTTAAGCGAAGACAGATTTCTTGTGCTTGA 2772 0.4282 MDHARSTSGNAEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASLKKAKRKSLGESDIYLESKSEDFDMPLASMKVEQHSASGKNRASKNQFRYTAETPTTKTTSVRHAPKPDDDSPDDIPHYEENWMSYESPPTSRMDLSRKRSRTNLDANAATVVCQECSDGSTDSSDDIRGQTCHQCQRNDRDRVIWCSRCDRRGYCESCILTWYSDMPLDEIQRICPACRGTCNCKVCLRVENSMKVRIWEIPVQDKLQYLHVLLSSVLPVVKQIHHEQCYEVELEKKLRGIEIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCTYDLCLNCCRDLREANVNPEKVTPTDEAKLSNQNLLYKLPDWRSNGDGSIPCPPKKYGGCGYSPLNLNRIFKMNWVAKLVKNVEEMVRGCQISEVGGSETKLNDLKLCQYSHREASYGNYLYCPTSEDLKTDGIGNFRKHWKIGGPIIVKQVFDRSSSWNPMAIWRGVQETADEKMKEVENRVVKAMDCLTWTEIDIKLNEFMKGYFEGRTRENGWPQLLKLKDWPSPSASEEFLLHQRPEFISKLPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGVNEEHGSGDSVTNLHFNMLDMVYLLVHTSEVKLKNLQGTESEKIQKSSDASELPVDPQICSVGSSADSSLGTERNGLDLDSNKKTSIINEGFENYSSAEGDMNNSELPVRDGDVVERTDPGVLWDVFRRQDVPKLTEFLKAHWKEFAQPDDMVTRPLYDGVIFLNGHHKMELKEEFGVEPWSFEQCVGEAVFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEDVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGFGDPNLTAMVSENYEKMVKRRQISCA 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0147 923 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 19 887 IPR045109 GO:0032454|GO:0033169
Lele15g0147 923 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 190 258 IPR018866 -
Lele15g0147 923 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Lele15g0147 923 Pfam WRC 18 58 IPR014977 -
Lele15g0147 923 MobiDBLite consensus disorder prediction 94 137 - -
Lele15g0147 923 ProSiteProfiles JmjC domain profile. 567 853 IPR003347 -
Lele15g0147 923 Pfam JmjC domain, hydroxylase 744 832 IPR003347 -
Lele15g0147 923 SMART cupin_9 574 853 IPR003347 -
Lele15g0147 923 ProSiteProfiles Zinc finger RING-type profile. 196 243 IPR001841 -
Lele15g0147 923 SUPERFAMILY Clavaminate synthase-like 477 861 - -
Lele15g0147 923 MobiDBLite consensus disorder prediction 1 21 - -
Lele15g0147 923 Gene3D Cupin 459 862 - -
Lele15g0147 923 MobiDBLite consensus disorder prediction 97 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0147 Lele-ChrLele15 900062 905804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0147 18 58 GRF Transcription Factor Family AT3G13960 46.341 2.70e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele15g0147 JmjC 7.9e-06 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2264 13 28768734 28774376 Lele15g0147 15 900062 905804 hybridization
Lele14g2200 14 27112786 27118559 Lele15g0147 15 900062 905804 hybridization