Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0146 ATGTCAAATATCACGAGCTGTGACAGTGGGAGTTTCTCCACAGAGAATACCAGAGAAGATGATGCTATTAAACAGCACCATCATCCTCAACTTACTGCTGCTCATCATCACCAGTTTCACAGTTCAAGTTCTCATACTACAACTACCACTAACAGCAACAGTTCCAACGCCAATTCCCAACTGCCTCCTCCTCCTCCTCCTCCTGTTACGAAGAAACGAAGCCTCCCAGGAAACCCAGATCCAAGTGCTGAAGTGATTGCTTTGTCACCAAACACCCTGATGGCGAGAAACCGATTCGTATGTGAAATCTGCAGCAAAGGATTCCAAAGGGATCAGAATCTGCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAGCAAAGGCCCACCACAGAAGTTCGAAAGCGCGTTTATGTTTGTCCAGAGCCGTCGTGCGTCCACCATAACCCAAGTCGAGCACTTGGTGACCTCACTGGCATCAAGAAGCACTTCTCAAGAAAACATGGCGAGAAGAAATGGAAGTGTGAAAAGTGCTCCAAGAGATACGCCGTCCAGTCCGACTGGAAAGCCCATTCTAAGATCTGTGGTACGAGGGAATACAAATGTGACTGTGGCACCGTCTTCTCCAGACGAGATAGCTTTATCACCCACGGAGCTTTCTGCGACGCGTTGGCCAAGGAGAATAATAAAGCCAACAATGAAGGACTACTAGGGCCAAAGTTAATTGGTCCAAATTCAAACTCATCACAAGGTCAACGTCAAATCCCAAATCCCGTTTCTTCATTGCCAATCAACTCCAACTACGTCAACCCACAAAACGGGACGCTTCATTATAACCATTCTGGTGAAATGAAGCATCCGCTATCACATCTTCATCAGGAGCTCCTGGAATTTCCTGCAAAACCATTCAACTACATGACTGGAAGCGTATTCGCAAGAAGCCTCTCGTCCAACAGTTCCTGTTCATCACTGCAACTGGGTTCAAATAGTTCTCTGAGGATGTTGGAAGAAAACGAGCACCAACCAGGTGGATCGGCCCATATGTCAGCGACGGCATTGTTGCAGAAAGCAGCTCAAATGGGAGCAACTATGAGTAACAGTAGTAACAGCTCGTGCATGGCACCCTCATCATTGGGGCATAATAATAGTAATAACCACTACTACATGAACAGTGGACAAGCTGATATCTCATCATCTCATTATTTCAGCGGAAATAATAATAGCTTTGGGATGAACAGTGTGGATATGTTCAATGCTATAATGGATCAAAGCAAGGCGTTATCGAAGATGATACAGCAGAACAGTCGAAGCAGTAATAATATGAATAACAATGGAGTTTTGCATGGTGCAATGAATAAAGCAAGTGGGGATGTAACGACTCTGGACTTGTTGGGGATCGGAGGAGGAGGAGGTGGTGGTGCACATGATGCTTTTCTATGGCACCAAGCAGGCTGA 1461 0.462 MSNITSCDSGSFSTENTREDDAIKQHHHPQLTAAHHHQFHSSSSHTTTTTNSNSSNANSQLPPPPPPPVTKKRSLPGNPDPSAEVIALSPNTLMARNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHGAFCDALAKENNKANNEGLLGPKLIGPNSNSSQGQRQIPNPVSSLPINSNYVNPQNGTLHYNHSGEMKHPLSHLHQELLEFPAKPFNYMTGSVFARSLSSNSSCSSLQLGSNSSLRMLEENEHQPGGSAHMSATALLQKAAQMGATMSNSSNSSCMAPSSLGHNNSNNHYYMNSGQADISSSHYFSGNNNSFGMNSVDMFNAIMDQSKALSKMIQQNSRSSNNMNNNGVLHGAMNKASGDVTTLDLLGIGGGGGGGAHDAFLWHQAG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0146 486 MobiDBLite consensus disorder prediction 35 58 - -
Lele15g0146 486 SUPERFAMILY beta-beta-alpha zinc fingers 98 195 IPR036236 -
Lele15g0146 486 MobiDBLite consensus disorder prediction 237 268 - -
Lele15g0146 486 Gene3D Classic Zinc Finger 99 141 - -
Lele15g0146 486 Pfam Zinc finger, C2H2 type 99 121 IPR013087 -
Lele15g0146 486 MobiDBLite consensus disorder prediction 59 74 - -
Lele15g0146 486 FunFam protein indeterminate-domain 5, chloroplastic-like 153 232 - -
Lele15g0146 486 FunFam protein indeterminate-domain 12-like 78 146 - -
Lele15g0146 486 Gene3D Classic Zinc Finger 152 234 - -
Lele15g0146 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Lele15g0146 486 MobiDBLite consensus disorder prediction 244 268 - -
Lele15g0146 486 MobiDBLite consensus disorder prediction 1 83 - -
Lele15g0146 486 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 468 IPR031140 -
Lele15g0146 486 MobiDBLite consensus disorder prediction 14 28 - -
Lele15g0146 486 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lele15g0146 486 SMART c2h2final6 140 170 IPR013087 -
Lele15g0146 486 SMART c2h2final6 175 195 IPR013087 -
Lele15g0146 486 SMART c2h2final6 99 121 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0146 Lele-ChrLele15 894153 896957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0146 63 370 IDZ Gene Family AT3G50700 53.333 7.14e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g0146 zf-C2H2 0.0083 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1440 05 9207193 9210527 Lele15g0146 15 894153 896957 CCT
Lele13g2256 13 28719895 28727446 Lele15g0146 15 894153 896957 CCT
Lele14g2192 14 27072057 27077291 Lele15g0146 15 894153 896957 CCT
Lele15g0154 15 944941 951906 Lele15g0146 15 894153 896957 CCT
Lele16g0163 16 968398 972103 Lele15g0146 15 894153 896957 CCT
Lele15g0146 15 894153 896957 Lele13g2274 13 28841051 28842515 CCT
Lele15g0146 15 894153 896957 Lele14g2209 14 27185234 27186701 CCT
Lele15g0146 15 894153 896957 Lele15g0137 15 821579 823031 CCT
Lele15g0146 15 894153 896957 Lele16g0144 16 841010 859880 CCT
Lele15g0146 15 894153 896957 Lele05g1435 05 9127958 9131008 CCT
Lele15g0146 15 894153 896957 Lele06g1296 06 8263028 8266228 CCT
Lele15g0146 15 894153 896957 Lele07g1499 07 9148420 9151697 CCT
Lele15g0146 15 894153 896957 Lele08g1293 08 8227113 8230326 CCT
Lele15g0146 15 894153 896957 Lele16g0151 16 915661 918188 ECH
Lele15g0146 15 894153 896957 Lele15g0146 15 894153 896957 ECH
Lele13g2266 13 28776579 28779048 Lele15g0146 15 894153 896957 hybridization
Lele14g2202 14 27120825 27123350 Lele15g0146 15 894153 896957 hybridization