Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0144 ATGGGTAGGTTCTGTCATCTCGTCATTGTTGTTTCGGGGCGTGTTGAAGGGCTTAGGTTCTGTATATTATTTCATGATGTGAAGCTTGAAGTAAATAAAGGATTGATGGCACCGACAAGGAAATCAAGAAGTGTGAATAAACGATTTTCAGGTTTAAATGAGACCTCTCCTGATAAGGATGGAGCTAATTCAAATAAAAATAAGCATCGGAAGAAAAAGTTGTCTGACAAATTAGGATCTCAATGGAGCAAGGAGGAACTAGAGCGTTTTTATGAAGCATACAGGAAGCATGGGAAAGATTGGAAGAAGGTATCTGCTGCTGTACGGAACAGATCTACTGAAATGGTGGAGGCTCTTTATAATATGAATAGGGCGTATTTATCTCTTCCAGAGGGAACAGCCTCTGTTGTTGGTCTCATAGCAATGATGACAGATCATTATAATGTGCTGGAAGGGAGTGATAGTGATAAGGAGAGCAGTGATGCTCCCGAATCTCAAAAACCTTTGAAACAGAAGCGTGGGAAAGTTCAGCTTAGTTTTTGTAAAGATTCTGTTCAAAGTCATTCAGTTGCTTCTAATGATGGTTGCCTCTCTTTATTGAAGAAAAGACACTTTGATGGTAGCCAGCCTCGTGCAGTTGGAAAAAGAACACCTCGCATCCCAGTTTCCCACTCTCATAGAAAATTTGATCGGGAAAATTTTGTTTCACCGAGTAAAAGAACCCTGAAGTCAGAGAGTAATGCTAATGATGATGAGGTTGCTCATGTTGCAGCACTTGCTTTAACTGAGGCTGCTCAAAGAGGAGGCTCTCCACATATTTCTCAAACTCAATACAGAAAAGCAGAGCAGAAATCCTCTCCTGTTCATAGCTGGGAAAGAATGTCAAAGACAGCTCGTGCCAAGTTTCATGACGCTTCTGTAGATGAAGAGTGCTTGGAAGGTAGTGTGGAAAGCAGGGAGGCTGAAAATGGGGAATATGCCAGAGATACTAGTCCATTGATGGACATGGAAGGTGTTGCCACTGTTGAAGTATTTCGCAAGGGGAAGAAAATTTACAGAAAGAGAGAGAGATATGTTCGAAACTATCAGCTTGATGATGGTGGGGAAGCATGTAGTGGCACTGAAGAAGGACTTTATTTTAATTCTTTGAAGGAAAAGGTTGATAGTGAGGTTACTAATGCCAAACCGGAGCGATTCTCTCCTAAAGGTCAGAGAAAACGAAGCAAAAAACTTTTCTTTGGAGATGAAAGTTCTGCCTTGGATGCTTTACAAACTTTGGCTGATCTGTCTTTAATGATGCCTGTGTCTACAATGGATTCTGAGTCATCAGTCCAGTTGAAGGAAGAAAGAATGACTGTTGATAAAGATGAGAAGTCCTCTTTGCCTGAAACTACATTAACAAGCCAGAACAGAGACAAACTTAAACTCCCAGGTCCAAAGCAGAAGATTCTTCATGCAGTTCCTGGAATTGAGGCTTCAACCACAAGAAAATCTAAACTTGGGCGGGAGTTAGAAAATGAAACAAATGCTTCAGCTGAATCAAAAGAGCATATAACTCCTGATAGAACATGGAAAAGAAAGCGCAAGTCTGCGGTCTCAAAGGCCGTATCTGATGAAGAGAATAAACCGATGATTAAAGGAAAACAGAGTGGTCAGGTTTTTGCTCTCCCAAAACAAGTGAAACCAGTCAGATCATCTGAGAGCTCCTTGTGCAGTGATCCAAAAGATTTAACAGTATCAACTGCAGAAATTCCACTAGCAAGTGAAGTTAGTTTACCAAATAAAAGAAGTAGACGTAAGATGAGCATGCAGAAGACATTCAATATGAAAGAGAAATCTTCTGAGAACGTATTGAAAAAACAACCTAGTAAGTACTCTTCCGGCCTTCAAGACAGGGCTTCATATTTAAAGGAAGAGCTTTCTGGTTGCTTGTCGTCGTACATGGTTCGTAGGTGGTGTACTTTTGAGTGGTTTTATAGTGCAATTGATTGTCCATGGTTTGCCAAAAGGGAATTCATGGAGTACTTAAACCATGTTGGACTAGGGAACATTCCAAGGCTAACTCTTGTTGAGTGGAGCGTTATAAAAAGTTCCCTGGGGAAACCTCGCAGGTTTTCTGAGCACTTCCTTCGTGAAGAAAGACAAAAACTTGAACAGTATAGGAAATCTGTGAGGAAACATTACACTGAACTCCGCACTGGTATCAGGGATGGACTCCCAACAGATTTAGCAAAACCTTTATTTGTTGGACAACGAGTAATTGCTATTCACCCCAAATCAAGAGAGGTTCATGATGGTAGTGTGCTTACTGTTGACCACGACAAATGCAGGGTTCAGTTTGACCGTCCTGAATTAGGGGTTGAATTTGTCATGGATATTGATTGCATGCCTATGAATCCCGTGGATAATATGCCAGAAGCTCTGAGAAGACAGATTGGTGCTGGCAAAGTTTCTTATATGGGCAAACAGCTACAGATAAATGAAATTTCTAATTTTGAGGGTGGGGTGACATGTGGTCCAGGTGGACCCCTGGAGAAGCTACCCGCCCCTTCAAGTACTTTATTAAAGGCAGGAAAGGAGGATGTTAATCATGCTGTTGCCCAAGCAAAGGTTGGAACGATTGACAATGTTGATACACTACAAGAAGCATATGCTCAGCCCTGTACATTCACACATAATCAAGCTAGAGAAGCTGATATACGTGCCCTTTCTGAACTGACTCGTGCTCTAGATAAAAAGGAAAAATTGTTAATGGAGCTTAGAAATGCAAATAGTGACATATTGGAAAACCAAAACGACGTAGACTACTTTAAAGATTCAAAGTCTTTCAAGAAGCATTACGCCACGGTTTCTTCTGCTCTGCTTAATTTGAGGCAACGAAATACTTACAGAGGAAACTCTCCATCACCATGGGTGAATGCCCCAGCTAGTTTCAATGTCCAAGATGATCTTCCATGTGCATTAGATAGTTCTCTAACGCAAGAGTTAGCATCAAGTGTCATTGAAATTATCAAAGGATCCAGGCTAAGAGCCCATGCCATGGTAGATGCTGCAATTCAGACGTTGTCTTCAACAAAAGAAGGTGAAGATGTTTTCTTGAGGATAGGACAAGCATTGGATTCCATTGATTATCAGCAGTTGGCCTCCAACTCTAAAGTGAATGGCAGTTTTGGTCACCATGATCAGTCAATTTGCTGCGCATCAGAAACTCTGCATAGTGATACATCAGGCCCGAAATTGATGAATGATTCCCACAAGGTTGATGTTCAAATTCCTTCCGAGCTCATTACATCCTGTGTCGCTACTTTGATCATGATTCAGACTTGTACTGAACGGCAATACCCACCAGCTGATGTTGCTCAGATATTAGATTCAGCCGTCAACAGCCTGCATCCTTGCTGCCCTCAAAACCTTCCTATATACAGGGAAATTAAGATGTGCATGGGACGAATTAAGACCCAGATTTTAGCTCTCATCCCGACTTGA 3486 0.4145 MGRFCHLVIVVSGRVEGLRFCILFHDVKLEVNKGLMAPTRKSRSVNKRFSGLNETSPDKDGANSNKNKHRKKKLSDKLGSQWSKEELERFYEAYRKHGKDWKKVSAAVRNRSTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGSDSDKESSDAPESQKPLKQKRGKVQLSFCKDSVQSHSVASNDGCLSLLKKRHFDGSQPRAVGKRTPRIPVSHSHRKFDRENFVSPSKRTLKSESNANDDEVAHVAALALTEAAQRGGSPHISQTQYRKAEQKSSPVHSWERMSKTARAKFHDASVDEECLEGSVESREAENGEYARDTSPLMDMEGVATVEVFRKGKKIYRKRERYVRNYQLDDGGEACSGTEEGLYFNSLKEKVDSEVTNAKPERFSPKGQRKRSKKLFFGDESSALDALQTLADLSLMMPVSTMDSESSVQLKEERMTVDKDEKSSLPETTLTSQNRDKLKLPGPKQKILHAVPGIEASTTRKSKLGRELENETNASAESKEHITPDRTWKRKRKSAVSKAVSDEENKPMIKGKQSGQVFALPKQVKPVRSSESSLCSDPKDLTVSTAEIPLASEVSLPNKRSRRKMSMQKTFNMKEKSSENVLKKQPSKYSSGLQDRASYLKEELSGCLSSYMVRRWCTFEWFYSAIDCPWFAKREFMEYLNHVGLGNIPRLTLVEWSVIKSSLGKPRRFSEHFLREERQKLEQYRKSVRKHYTELRTGIRDGLPTDLAKPLFVGQRVIAIHPKSREVHDGSVLTVDHDKCRVQFDRPELGVEFVMDIDCMPMNPVDNMPEALRRQIGAGKVSYMGKQLQINEISNFEGGVTCGPGGPLEKLPAPSSTLLKAGKEDVNHAVAQAKVGTIDNVDTLQEAYAQPCTFTHNQAREADIRALSELTRALDKKEKLLMELRNANSDILENQNDVDYFKDSKSFKKHYATVSSALLNLRQRNTYRGNSPSPWVNAPASFNVQDDLPCALDSSLTQELASSVIEIIKGSRLRAHAMVDAAIQTLSSTKEGEDVFLRIGQALDSIDYQQLASNSKVNGSFGHHDQSICCASETLHSDTSGPKLMNDSHKVDVQIPSELITSCVATLIMIQTCTERQYPPADVAQILDSAVNSLHPCCPQNLPIYREIKMCMGRIKTQILALIPT 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0144 1161 Coils Coil 710 730 - -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 285 325 - -
Lele15g0144 1161 Gene3D - 26 134 - -
Lele15g0144 1161 PANTHER LIN-9 36 1161 IPR010561 GO:0006351|GO:0017053
Lele15g0144 1161 MobiDBLite consensus disorder prediction 42 78 - -
Lele15g0144 1161 ProSiteProfiles SANT domain profile. 77 114 IPR017884 -
Lele15g0144 1161 Pfam Myb-like DNA-binding domain 80 117 IPR001005 -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 438 478 - -
Lele15g0144 1161 SMART sant 78 126 IPR001005 -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 496 542 - -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 490 542 - -
Lele15g0144 1161 ProSiteProfiles Myb-like domain profile. 80 121 IPR001005 -
Lele15g0144 1161 CDD SANT 82 116 IPR001005 -
Lele15g0144 1161 Coils Coil 903 933 - -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 151 171 - -
Lele15g0144 1161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 116 IPR017930 -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 268 284 - -
Lele15g0144 1161 SUPERFAMILY Homeodomain-like 76 125 IPR009057 -
Lele15g0144 1161 SMART DIRP_2 658 759 IPR033471 -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 443 461 - -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 151 175 - -
Lele15g0144 1161 Pfam DIRP 657 758 IPR033471 -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 43 60 - -
Lele15g0144 1161 FunFam Protein ALWAYS EARLY 3 isoform A 38 134 - -
Lele15g0144 1161 MobiDBLite consensus disorder prediction 265 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0144 Lele-ChrLele15 860301 869580 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele15g0144 DIRP 9.9e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0144 15 860301 869580 Lele15g0144 15 860301 869580 ECH
Lele13g2269 13 28808927 28813325 Lele15g0144 15 860301 869580 hybridization
Lele14g2205 14 27151027 27155085 Lele15g0144 15 860301 869580 hybridization