Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0125 ATGAGATTATTACCATTCCTTTCCGTTCAATCTCCCGATGCCCTCGATACTGCAGAGCAGAGCATCACCTCCACCGGTATTTCAGATGTAATTTTGACATGGAAAGTTGTCTATATGTCACACGAGGATCAGGATCAGGAACAGGATCACAAGGGTCCCATTTTTCTTGCTCTTGTTCTGATTTTGTTCATTTGGATGGATCATCAAGGGCATAACCAGAACCAATCTATGGATCATCATCAACTGCCTTATGCCTCGAACCCGTACCAGCAGACCCAAATAACTGCAACACCGGGATCCACCGTCACATCAGTTGGGACAATTCAATACAGTGGTCAGCCTGCCGCCGGAGCTCAAGTGGGACAACACCAACTTGCTTATCAGCACATTCACCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAAACCTTTTGGGCTAATCAGTACCAAGAAATCGAGAAGGCGACTGATTTCAAGAATCACAGCCTTCCCTTGGCCAGGATCAAGAAGATTATGAAAGCTGATGAGGACGTTCGAATGATATCAGCCGAGGCGCCAGTCATATTTGCAAGGGCGTGTGAGATGTTTATACTGGAGCTAACTTTGCGTTCTTGGAATCACACTGAAGAGAACAAGAGGAGAACACTTCAGAAGAACGATATTGCAGCAGCAATCACAAGGACTGATATATTTGATTTCTTGGTGGATATTGTTCCGCGTGAGGATTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGGACAATGCCCGTGGCAGGGCCTGCTGATGCAATTCCTTATTGTTACATGCCACCTCAGCATGCACCGCAAGTAGGCGCGGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCGACCATGTATGCCCAACAGTCTCATCCCTACATGGCGCAGCATATGTGGCCACAGCCTCCAGAGCAACGACAATCAACTCCTGATCATTACTGGCGCAGTGCGATGAAGTTAGAACGTCAAATTGAGAGGGCAGTTGAGAAAGCCCTTGGCACTTGGTGA 1038 0.4759 MRLLPFLSVQSPDALDTAEQSITSTGISDVILTWKVVYMSHEDQDQEQDHKGPIFLALVLILFIWMDHQGHNQNQSMDHHQLPYASNPYQQTQITATPGSTVTSVGTIQYSGQPAAGAQVGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKATDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAIPYCYMPPQHAPQVGAAGVIMGKPVMDPTMYAQQSHPYMAQHMWPQPPEQRQSTPDHYWRSAMKLERQIERAVEKALGTW 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0125 345 SUPERFAMILY Histone-fold 131 235 IPR009072 GO:0046982
Lele15g0125 345 FunFam Nuclear transcription factor Y subunit gamma 128 241 - -
Lele15g0125 345 Pfam Core histone H2A/H2B/H3/H4 120 226 IPR007125 GO:0003677
Lele15g0125 345 Gene3D Histone, subunit A 125 241 IPR009072 GO:0046982
Lele15g0125 345 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 121 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0125 Lele-ChrLele15 755441 759169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0125 66 309 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.633 2.33e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele15g0125 Histone 7e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2279 13 28867711 28873426 Lele15g0125 15 755441 759169 CCT
Lele14g2214 14 27217885 27225146 Lele15g0125 15 755441 759169 CCT
Lele15g0133 15 791843 797432 Lele15g0125 15 755441 759169 CCT
Lele16g0141 16 817117 826529 Lele15g0125 15 755441 759169 CCT
Lele15g0125 15 755441 759169 Lele15g0125 15 755441 759169 ECH
Lele13g2288 13 28902884 28906662 Lele15g0125 15 755441 759169 hybridization