Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0105 ATGGATGGCGTGGTTCATTTGAGGAAGCAGTTGGTTGATTATAGTGCCTCTCTGTTTCAGGAGGGTTTTCTAGATGATCAATTTACTCAGCTTCAGCAACTTCAAGATGAAAGCAACCCAGACTTTGTGGTTGAAGTGGTGACTCTCTTTTTCGAAGACGCAGAGAGGCTTCTTAATGAGCTGGAACAAGCGCTTGGCCAGGAAAGTATTGACTTCAAAAGAGTGGACGCCCATGTTCACCAGTTGAAGGGTAGTAGCTCCAGCATTGGAGCACAGAGGGTTCAGAAAGTCTGCATTGCCTTTCGCAGCTACTGTGAGGAGCAGAATGTTGAAGGGTGTCTTAAAAGCTTGCAGCAAGTAAGAGAAGAGTATTGGTTGGTGAAGAACAAGCTTGAGACTCTGTTCAAGATGGAGCAACAACTTTTGGCCGCCGGGGGTTCGGTTCCGATGTAG 453 0.468 MDGVVHLRKQLVDYSASLFQEGFLDDQFTQLQQLQDESNPDFVVEVVTLFFEDAERLLNELEQALGQESIDFKRVDAHVHQLKGSSSSIGAQRVQKVCIAFRSYCEEQNVEGCLKSLQQVREEYWLVKNKLETLFKMEQQLLAAGGSVPM 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0105 150 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 5 140 IPR036641 GO:0000160
Lele15g0105 150 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 7 141 IPR045871 GO:0000160|GO:0009927|GO:0043424
Lele15g0105 150 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 39 144 IPR008207 GO:0000160
Lele15g0105 150 SMART hpt_2 36 135 IPR008207 GO:0000160
Lele15g0105 150 FunFam Histidine-containing phosphotransfer protein 1 2 149 - -
Lele15g0105 150 Pfam Hpt domain 45 123 IPR008207 GO:0000160
Lele15g0105 150 Gene3D HPT domain 1 150 IPR036641 GO:0000160
Lele15g0105 150 CDD HPT 45 124 IPR008207 GO:0000160
Lele15g0105 150 Coils Coil 51 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0105 Lele-ChrLele15 634251 635320 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0105 15 634251 635320 Lele13g2318 13 29094133 29098011 CCT
Lele15g0105 15 634251 635320 Lele14g2253 14 27443859 27448047 CCT
Lele15g0105 15 634251 635320 Lele15g0093 15 570962 574823 CCT
Lele15g0105 15 634251 635320 Lele15g0105 15 634251 635320 ECH
Lele13g2309 13 29022590 29027132 Lele15g0105 15 634251 635320 hybridization
Lele14g2240 14 27350822 27358848 Lele15g0105 15 634251 635320 hybridization