LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g0071	ATGGAGAACTGGCGAAATAACCAACTCGACCGGATGGAGGAAAATTTTATTATTGATTACATGGAGCAGTATGAAATACTGGAGCAAATTGGAAAAGGTGCTTTTGGATCCGCTCTTCTTGTGCGGCATAAGCATGAGAAAAAAAAATATGTGCTGAAGAAAATTCGCCTTGCTCGCCAAACTGAGCGGTCTCGTAGATCTGCACACCAGGAGATGGAGCTAATCTCTAAATTAAGAAATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCAGAAGCTATAAAGAAGGCTAATGGTGTTCTTTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCCCTTGACTACTTACACCTAAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCGAGACATACGCCTTGGTGATTTTGGACTTGCCAAAATATTGACTTCCGATGATCTTGCTTCCTCTGTTGTCGGAACTCCTAGTTACATGTGCCCTGAGCTCTTGGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGGCAGCTCACAAGCCTGCATTTAAAGCATTTGATATACAGGCACTAATCAACAAGATTAACAAGTCTATTGTGGCCCCACTGCCAACAAAGTATTCTGGTGCATTTCGGAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTCGTGCTGCAGAGCTGCTTGGACACCGGCATCTTCAACCTTATGTTCACAAGATCCATCTAAAGCTTAATAACCCCAGGCGAAGTACACTACCAGTTCATTGGTCAGAATCCAACTACATGAAGAAAACTAGATTTCTGGAGTCAGAAGATGATCCTGTTTCAATATACAGAGATAAGCGACATTCTTTTAGCAATGATATGACTCTTAATCCTAGCATATCTGGAGCTGAGCAAGATTCTGTTTGTTCTACCCTAGAAATAGATTGTGCTCCAGATCATTTGAATCAACGGTTGGCAGAGCTATGCATCGGTGATAGCCTTGAGGTGAAGGCCGTCTGTAAGCCTGTTGTTTCAAGGATATCTAGTTTCACCAAGACTTCAAGACATACCTCCATAAAGGCTTCTGCCACCGCTAAGAAATCAATGGAACCCACAAAAAAGCGCGTGTTGCTTCCTACCCCACGCAAAGCCAGACAGTCAGTCTATACAACTCGCAGAGCATCATTTCCATTGCATACAAGAAGTTCTGATCAACACTCTCTTCATGGGCCTGGTATTGGTTTACTTAGCCATATAAAGTCTCCAGACATTTCAGTAAACTCTCCTAGAATCGATAAGATAGCTGAATTCCCACTAGCATCATATGAGGAACCACTTTTTCCCATCTATAGAAGTCCAACCTCAGCCCAGGGTTCCTCAGGCTCCATACCTTGTGGTGATCGTTCAATCATGAAAGATAAATGCACAGTTCAGATATGTAATAGAGCCTCAGTCAAGCATCGATTGACAGATTCATGGCAGGGAATCAAGCTAAACACGTTTCAGGAAAATGCTGAGGATAAAAGTGGCTCCTCTGATCAAAATGCAACTGCCGGAGCATCAAGCCATGCCTCTTCAGACATGCGCCGCCGGCAGTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAGCATGAAAGGTATGAAGAACTAGGGGTTTTATTGAAACCATTTGGGCCAGGGAAGGCCTCTCCAAGGGAAACTGCCATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTCTCAACCGTGAAGAATCCCTATAA	1923	0.4259	MENWRNNQLDRMEENFIIDYMEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDRDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRSLVKSMLRKNPELRPRAAELLGHRHLQPYVHKIHLKLNNPRRSTLPVHWSESNYMKKTRFLESEDDPVSIYRDKRHSFSNDMTLNPSISGAEQDSVCSTLEIDCAPDHLNQRLAELCIGDSLEVKAVCKPVVSRISSFTKTSRHTSIKASATAKKSMEPTKKRVLLPTPRKARQSVYTTRRASFPLHTRSSDQHSLHGPGIGLLSHIKSPDISVNSPRIDKIAEFPLASYEEPLFPIYRSPTSAQGSSGSIPCGDRSIMKDKCTVQICNRASVKHRLTDSWQGIKLNTFQENAEDKSGSSDQNATAGASSHASSDMRRRQFDTSSFQQRAEALEGLLEFSARLLQHERYEELGVLLKPFGPGKASPRETAIWLSKSFKENTLNREESL	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g0071	640	SMART	serkin_6	24	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g0071	640	SUPERFAMILY	Protein kinase-like (PK-like)	20	324	IPR011009	-
	Lele15g0071	640	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	21	590	-	-
	Lele15g0071	640	FunFam	Serine/threonine-protein kinase Nek3	106	352	-	-
	Lele15g0071	640	CDD	STKc_Nek	23	273	-	-
	Lele15g0071	640	Gene3D	Transferase(Phosphotransferase) domain 1	104	295	-	-
	Lele15g0071	640	FunFam	Serine/threonine-protein kinase Nek2	21	103	-	-
	Lele15g0071	640	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	145	157	IPR008271	GO:0004672\|GO:0006468
	Lele15g0071	640	MobiDBLite	consensus disorder prediction	544	575	-	-
	Lele15g0071	640	MobiDBLite	consensus disorder prediction	544	566	-	-
	Lele15g0071	640	ProSitePatterns	Protein kinases ATP-binding region signature.	30	53	IPR017441	GO:0005524
	Lele15g0071	640	ProSiteProfiles	Protein kinase domain profile.	24	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g0071	640	Pfam	Protein kinase domain	24	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g0071	640	Gene3D	Phosphorylase Kinase; domain 1	2	103	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g0071	Lele-ChrLele15	427009	432172	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g0071	30	309	MAP Kinase Kinase Kinase	AT1G53570	30.333	1.29e-35	139

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Lele15g0071		Pkinase	9.6e-63	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g2334	13	29189336	29192718	Lele15g0071	15	427009	432172	CCT
	Lele14g2264	14	27534499	27538026	Lele15g0071	15	427009	432172	CCT
	Lele15g0081	15	480132	484167	Lele15g0071	15	427009	432172	CCT
	Lele16g0088	16	521993	525559	Lele15g0071	15	427009	432172	CCT
	Lele15g0071	15	427009	432172	Lele15g0071	15	427009	432172	ECH
	Lele13g2344	13	29251438	29260483	Lele15g0071	15	427009	432172	hybridization
	Lele14g2276	14	27593829	27598439	Lele15g0071	15	427009	432172	hybridization