Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0050 ATGGTCTTCCAAACACCATCGCACAACATCCATCCTCATCTGACGGCCCCGATTCATCCTTCTCTGCTCTTCGCTGATGCCTGTGCTCGTAAAGAGCGCATCTTGCTGGTGAGTTCCTTTGGGTATGGTCTTCGAGTCAAATGGAGCAGGTTTTGTTTACCCCTTCTTTCTTTCAACTGGATATCTTCACTTGTCAGTTTATGGTCTGTTGATCTTTTGATGGCAAATAGTACGTGGTTTGACCCAGAAAGTGATGAAATTTCCTGGGGACCAGATCCACTTCAAGATATTCTTGATTTTCCTGGAATTGTTTCTGTCCAGAACGAGCAGTTGGAAAATAGTTCTTGTTACATACCGGATGACAATACTAAAACAACTGGTCAAGTGGAATGGGTTGATCAGTTAATATCGGTTGATGATTCTTTACATCCAAATTGGAGTCAGCTTCTTGGTGGTGATGATGTAACAGATTCAAAATCAAAGGAGTCCCAGGTTTCCCGGCAGCAGCATGTAACTGAAGAAATTAATGCCCTTAATAATTCAGTGTCAACGGCACCACAAACTAAGCCAAGAATGCGTTGGACTCCAGAACTTCACGTGTCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGAAGTGAGAAGGCTACTCCTAAGGGTGTCTTGAACCTGATGAAAGTCGAGGGCCTTACCATCTATCATGTGAAAAGCCACCTACAGGTATATATATGGTTTTTCTTCTTCAATAGGAGTATGGGGATCATTGAAACTCTGCGGTTGCAAATGGAATTACAAAAACGACTTCATGAACAGCTTGAGATTCAAAGAAAATTGCAGATTCAGATTGAAGACCAAGGCAAGCGTCTTCAGATGATGTTTGAGAGACAAAAAGAAATGGAGGACGGCAAGCTAAACGGCTCCTCCTCCATGGATGAGCCGTCTGCTTCCATATCAAACAAGGTTGAAAATTCAGAAATGTCAAATGAGGGACATAACAAATTAGGAACTGCAAAAGCCATGCCTGAAGGAAGTTCCCAGGATGGAAGCACAAGGCTAAAAGCAGATGACAATATGGTAGAACAGGAGCTGGGAGAAGATCGGTTTGAGGGACCACCCACAAAACGAGTTAAGAGTTGA 1134 0.4312 MVFQTPSHNIHPHLTAPIHPSLLFADACARKERILLVSSFGYGLRVKWSRFCLPLLSFNWISSLVSLWSVDLLMANSTWFDPESDEISWGPDPLQDILDFPGIVSVQNEQLENSSCYIPDDNTKTTGQVEWVDQLISVDDSLHPNWSQLLGGDDVTDSKSKESQVSRQQHVTEEINALNNSVSTAPQTKPRMRWTPELHVSFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQVYIWFFFFNRSMGIIETLRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFERQKEMEDGKLNGSSSMDEPSASISNKVENSEMSNEGHNKLGTAKAMPEGSSQDGSTRLKADDNMVEQELGEDRFEGPPTKRVKS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0050 377 MobiDBLite consensus disorder prediction 352 377 - -
Lele15g0050 377 MobiDBLite consensus disorder prediction 306 330 - -
Lele15g0050 377 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 249 345 IPR044848 GO:0003700
Lele15g0050 377 Pfam Myb-like DNA-binding domain 191 241 IPR001005 -
Lele15g0050 377 FunFam Myb family transcription factor 188 244 - -
Lele15g0050 377 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 189 241 IPR006447 GO:0003677
Lele15g0050 377 SUPERFAMILY Homeodomain-like 187 243 IPR009057 -
Lele15g0050 377 MobiDBLite consensus disorder prediction 299 377 - -
Lele15g0050 377 Coils Coil 254 274 - -
Lele15g0050 377 Gene3D - 188 243 - -
Lele15g0050 377 Pfam MYB-CC type transfactor, LHEQLE motif 253 297 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0050 Lele-ChrLele15 302939 306946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0050 87 314 G2-like Transcription Factor Family AT3G04450 42.751 3.25e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele15g0050 Myb_DNA-binding 9.1e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0050 15 302939 306946 Lele13g1917 13 26836517 26837320 CCT
Lele15g0050 15 302939 306946 Lele14g1852 14 25178068 25179743 CCT
Lele15g0050 15 302939 306946 Lele15g0490 15 2881857 2882666 CCT
Lele15g0050 15 302939 306946 Lele16g0513 16 2832267 2833913 CCT
Lele15g0050 15 302939 306946 Lele16g0053 16 342015 345631 ECH
Lele15g0050 15 302939 306946 Lele15g0050 15 302939 306946 ECH
Lele13g2370 13 29378333 29380617 Lele15g0050 15 302939 306946 hybridization
Lele14g2298 14 27711289 27713573 Lele15g0050 15 302939 306946 hybridization