Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0046 ATGTCGAACACCCAATTGCTCCCTTCCATCTGCGATTCATGGCGACTCCATCAGCCTCTGTCGCGTCTTCCGTATCTTCGCAATTCGCCAACTCAACGCTTCATATTCCCCGTGCCCTTTCACCTTGAGCAATCCCTAGCGACGCAGTATGAGACCCCATATGTGGCGGCATCGCCCGCAGTGCAAATTCCTCCTGCTCCCCTGTATCCCTCTCCCGCACTGGTTGCTGGTTTGTATCCTCTGCCACAGTATCAGCAGGCGCAGCAACTATTTCAAAGGGATGCACAGACAATTACACCTGAGGCTCGAGAGTGTCAACTGTCAAGGCGGCCATTGCAAATAGCGAGGTTGAACATAAAGGGGAGACCAAAAAGAAAGCAGTTCCTCGCAAAGCTGCTGGCCAAACATGGGAGGATCCCACCCTTGCAGATTGGCCACAAACTGGTGCAGATGAATTCGTCATATGATTATCTGCTCTTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGCTCTTTCAAAAGCATTTTCTCGATTTCCTTCCTTTAACATGGCCCGAGTTGTCAGAGACAAGCGGACTGGAAAAACGAAGGGTTATGGATTTGTAATCTTTGCCAATCCCGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATACGTTGGAAATCGACCAATTAAGCTGCGCAAGAGTAAGTGGCAGGACAGGACAGATTCTGGGGCCATGGAAAAACAGAAGGTAGCTTTACTGTTTTGA 762 0.4882 MSNTQLLPSICDSWRLHQPLSRLPYLRNSPTQRFIFPVPFHLEQSLATQYETPYVAASPAVQIPPAPLYPSPALVAGLYPLPQYQQAQQLFQRDAQTITPEARECQLSRRPLQIARLNIKGRPKRKQFLAKLLAKHGRIPPLQIGHKLVQMNSSYDYLLFCGDLGNEVNDDALSKAFSRFPSFNMARVVRDKRTGKTKGYGFVIFANPADLAAALKEMNGKYVGNRPIKLRKSKWQDRTDSGAMEKQKVALLF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0046 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 229 IPR000504 GO:0003723
Lele15g0046 253 SMART rrm1_1 158 231 IPR000504 GO:0003723
Lele15g0046 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 235 IPR000504 GO:0003723
Lele15g0046 253 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 72 239 - -
Lele15g0046 253 Gene3D - 80 248 IPR012677 -
Lele15g0046 253 SUPERFAMILY RNA-binding domain, RBD 148 239 IPR035979 GO:0003676
Lele15g0046 253 CDD RRM_RBM42 156 233 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0046 Lele-ChrLele15 277323 281352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0046 159 240 Eukaryotic Initiation Factors Gene Family AT1G71770 31.325 8.71e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2375 13 29400909 29403786 Lele15g0046 15 277323 281352 hybridization
Lele14g2305 14 27740865 27743006 Lele15g0046 15 277323 281352 hybridization