Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0041 ATGGATCAATCAGTTCTTGATGACATCATCAATCGTCTGCTTGAAGTTCGGGGTCGACCGGGTAAGCAGGTTCAGTTATCGGAGTCAGAGATCCGCCAGCTATGTGTAGCGTCTAAAGAAATCTTCTTGCAGCAGCCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGTGGTGATGTGCATGGTCAATATTCTGATCTTTTGAGACTTTTCGAGTATGGTGGATTACCCCCTCATGCTAATTATTTGTTTTTGGGGGATTATGTGGATAGGGGGAAACAGAGTTTAGAAACAATATGCCTTCTCCTGGCTTATAAAATAAAATATCCTGAGAACTTTTTCCTTTTGAGAGGGAACCATGAATGTGCTTCTATAAATCGAATATATGGATTTTATGATGAGTGTAAGAGAAGATTCAATGTAAGGTTGTGGAAGACATTTACAGATTGCTTCAACTGCCTGCCAGTGGCAGCCCTTATTGATGAAAAGATTCTGTGTATGCATGGGGGACTTTCACCTGATTTGCATAATTTGGATCAAGTAAGAACTCTACAGCGACCCACTGATGTGCCAGATACAGGTTTGCTTTGTGATCTCCTTTGGTCGGACCCAAGCAAAGATGTTCAAGGCTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTGTCAGAGTTTCTTCAGAAGCATGATCTAGACCTTATATGCCGTGCTCATCAGGTTGTAGAGGATGGATATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCAGCTCCTAATTATTGTGGGGAGTTTGACAATGCCGGTGCCATGATGAGTGTCGATGAGACGTTAATGTGCTCTTTCCAAATATTAAAGCCTGCTGATAAAAAACCAAAGCTCAATTTTGGAAGTACGACAACTGCTAAGCCTGGAAGCTCTCCAGCTGGTGTCAAGTCCTTCCCGGATGGGGTCATAATCTCTTCGTTGTACGCTAGTAGCGGGTATATGTTGTTCTGGAAATTGCAAAAAGGGTCTGGCTTCTGGCAATTTTGCGGTGTCTCTGCTATGACACCTGTAAAGATGTTTCCTAGGTGGAAGTGGGGTTCTCCGAAGGAGCATGAGTGGAGACGCCTAAGACAACAACAGACTCGAGGATCTGTACCTGATCTCAAACGGTCAACAATGGATCTCGCGTACGTCATGGGTTTTTTATTGGGACGACTCATATTGACCTTTTACCCATTAACAAATAGTTACCTCGCCGATTTTGAGGTTGAAATGGTTGGCCGTTGTTCTCCCAGCACTACTCGCACACGGCTGGACCAAATAACGTTAAAAAGGCAATTGAGAAGGAGCCACGTAGAAAGTGTTGGGGAGGAAACAAGGCATAAAAGACAGAAAGAGGGGTGTGCTGGCGACATGATTAAGCCCTACTTTGACTTTAGAAAGGAAGGCCAATTTGAGGTTTAG 1473 0.4345 MDQSVLDDIINRLLEVRGRPGKQVQLSESEIRQLCVASKEIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPHANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLHNLDQVRTLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKPKLNFGSTTTAKPGSSPAGVKSFPDGVIISSLYASSGYMLFWKLQKGSGFWQFCGVSAMTPVKMFPRWKWGSPKEHEWRRLRQQQTRGSVPDLKRSTMDLAYVMGFLLGRLILTFYPLTNSYLADFEVEMVGRCSPSTTRTRLDQITLKRQLRRSHVESVGEETRHKRQKEGCAGDMIKPYFDFRKEGQFEV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0041 490 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Lele15g0041 490 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Lele15g0041 490 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Lele15g0041 490 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 299 - -
Lele15g0041 490 SMART pp2a_7 26 296 IPR006186 GO:0016787
Lele15g0041 490 FunFam Serine/threonine-protein phosphatase 1 303 - -
Lele15g0041 490 CDD MPP_PP1_PPKL 5 294 - -
Lele15g0041 490 Gene3D - 1 305 IPR029052 -
Lele15g0041 490 SUPERFAMILY Metallo-dependent phosphatases 17 299 IPR029052 -
Lele15g0041 490 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Lele15g0041 490 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Lele15g0041 490 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Lele15g0041 490 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Lele15g0041 490 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Lele15g0041 490 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Lele15g0041 490 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0041 Lele-ChrLele15 239525 245291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0041 33 239 Calmodulin-binding Proteins AT5G63870 30.645 2.76e-26 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0041 15 239525 245291 Lele16g0041 16 276687 278160 ECH
Lele15g0041 15 239525 245291 Lele15g0041 15 239525 245291 ECH
Lele13g2379 13 29426618 29430729 Lele15g0041 15 239525 245291 hybridization
Lele14g2309 14 27780688 27787024 Lele15g0041 15 239525 245291 hybridization